PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077881001
Common NameGSBRNA2T00077881001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 433aa    MW: 47274.6 Da    PI: 9.8941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077881001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001199220323
                          ETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                          C+ Cg++F+  ++L+ H+ + H
  GSBRNA2T00077881001 199 CSQCGEVFPKLESLELHQAVrH 220
                          ******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037197225IPR007087Zinc finger, C2H2
PROSITE patternPS000280199220IPR007087Zinc finger, C2H2
SuperFamilySSF563991.34E-19222428No hitNo description
Gene3DG3DSA:3.90.228.105.4E-10224429IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MALLTFLPEN AESPKHTPPP NKRKKREINH TNQTQKPHKP QKQKAVAPQK QPSSWDQIKN  60
LLTCKQIEGS RIHDPSKNSQ PGPSTTTHLL SPSKLGSSCS SICRFRDVAH GNTRVVHRAD  120
HSPDVANSAT PDSETRLLTR KPGQHGSSSS SRSLRYGSTT SSATTSFRAM QFRKLSGCYE  180
CHMIVDPSKY PISPRVRACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS GRNIVEIIFK  240
SSWLKKDSPI CKIERILKVH NTQRTIQRFE DCRDAVKARA LQTTRKDARC AADGNELLRF  300
YCTTLTCSLG SRGSSSLCSN LTNCGVCNVI RHGFQGKSGA GEANAAVRTT ASSGRADDLL  360
RCSDDARRVM LVCRVIAGSV KHNSTVGVSS TGGVFDSVAV NAGAYSNMEE LVVYNPRAIL  420
PCFVVIYKVV ES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.135731e-170seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077881001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686988.10.0uncharacterized protein LOC106390972
RefseqXP_013686989.10.0uncharacterized protein LOC106390973
TrEMBLA0A078FMK20.0A0A078FMK2_BRANA; BnaC02g23540D protein
STRINGBo2g085310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]