PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077937001
Common NameGSBRNA2T00077937001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 494aa    MW: 57181.9 Da    PI: 9.0539
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077937001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.88.3e-3026109186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW++ e+laL+++r+em++++r++ lk+plWee+s+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++l+
  GSBRNA2T00077937001  26 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMMEFGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELQ 109
                          8********************************************************************975544..6******98 PP
2trihelix105.53.8e-33327412187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev +Li++r+++e +++++  ++plWee+s  mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  GSBRNA2T00077937001 327 RWPKTEVEVLIRIRKNLEANYQENGTRGPLWEEISGGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFNQLEA 412
                          8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0412385IPR001005SANT/Myb domain
CDDcd122033.40E-232590No hitNo description
PROSITE profilePS500907.0042583IPR017877Myb-like domain
PfamPF138374.0E-2025111No hitNo description
SMARTSM007170.057324386IPR001005SANT/Myb domain
PROSITE profilePS500907.364326384IPR017877Myb-like domain
PfamPF138371.4E-23326413No hitNo description
Gene3DG3DSA:1.10.10.607.2E-4326383IPR009057Homeodomain-like
CDDcd122032.64E-24327391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MGGSGEDEKD MKMEEIGEVG GGGGNRWPRP ETLALLRIRS EMDKAFRDST LKAPLWEEIS  60
RKMMEFGYKR SAKKCKEKFE NVYKYHKRTK EGRTGKSEGK TYRFFEELQA LEALNSYPPE  120
PESQPLKSST ATTTVTTTTS LIPNNHATTI DTGFRPTSND LINNVSSLNL FSSSTSSSTA  180
SDEEEDHHHQ DKRSRKKRKY WKRLFTKLTK ELMAKQEKVQ KRFLEIFENQ ERERISREEA  240
WRVQEVARIN REHKTLVHER SNAVAKDAAI ISFLHKISGG QQQQPRQKHK VPQRKQYHSE  300
HSITFESKEP RPVLFDSNHS LSPSSSRWPK TEVEVLIRIR KNLEANYQEN GTRGPLWEEI  360
SGGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFNQL EALYNERNKS  420
GALSILPLML TPQLLPQETQ TELKTDQGDK GEEGESEEDD YENEDEEGDN ETSEFEIVLN  480
KSSPMDINNN IFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077937001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792831e-138AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence.
GenBankAK2277781e-138AK227778.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-35-A17.
GenBankAY0871171e-138AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.
GenBankBT0303631e-138BT030363.1 Arabidopsis thaliana At1g76890 mRNA, complete cds.
GenBankCP0026841e-138CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ1088311e-138DQ108831.1 Arabidopsis thaliana clone 27806 mRNA sequence.
GenBankX727801e-138X72780.1 A.thaliana mRNA for GT-2 factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013662971.10.0trihelix transcription factor GT-2-like
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A078FML70.0A0A078FML7_BRANA; BnaC02g23790D protein
STRINGBra008286.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]