PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077987001
Common NameGSBRNA2T00077987001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 358aa    MW: 40165.6 Da    PI: 6.5167
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077987001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17e-32199254156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W++eLH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  GSBRNA2T00077987001 199 KQRRCWSHELHRRFLNALKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 254
                          79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.944196256IPR017930Myb domain
SuperFamilySSF466896.19E-18197257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-28197257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-27199254IPR006447Myb domain, plants
PfamPF002496.5E-7201252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MIKSLSNMKN YNEKREKCCE YIEALEEERR KINVFQRELP LCLELVTQAI EAYKKEISGT  60
TTDTLYGQPE CSEQTTGECG PVLDLFLPIK QSSASTDEEE EEEEVDEDDD VEHESHDTGI  120
DFVDKNMKSE WLKSVQLWNQ PEAVPVSKWE RSQQETQTLV EPIKENDNGA GGSARQKTEA  180
ERGGSGGSGG SSSRRGQRKQ RRCWSHELHR RFLNALKQLG GPHVATPKQI RELMKVDGLT  240
NDEVKSHLQK YRLHTRRPSQ TVPNNRDSQT QHFVVVGGIW VPQASHSKAN AVASRETTTG  300
IYGPMASPLP SEWPSHSSFG REISEERSRC SNKGIVRCSS PAMSSSTRTK TKDAKMS*
Functional Description ? help Back to Top
Source Description
UniProtProbable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077987001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647535.10.0transcription factor HHO1-like
SwissprotQ9LS001e-179HHO1_ARATH; Transcription factor HHO1
TrEMBLA0A078FKZ30.0A0A078FKZ3_BRANA; BnaA06g33390D protein
STRINGBra025161.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136001827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.11e-175G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]