PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078006001
Common NameGSBRNA2T00078006001, LOC106349414
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 318aa    MW: 35065.3 Da    PI: 4.7929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078006001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.8e-15119167153
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                          ++  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+ + ++++
  GSBRNA2T00078006001 119 TKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAADAYANKKLEF 167
                          5789*****9.**********72....36******************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-9119166IPR001471AP2/ERF domain
CDDcd000186.51E-18119160No hitNo description
PROSITE profilePS5103217.833120178IPR001471AP2/ERF domain
SMARTSM003806.1E-12120174IPR001471AP2/ERF domain
PRINTSPR003672.4E-6121132IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-14122167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-19123168IPR001471AP2/ERF domain
PRINTSPR003672.4E-6143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAEPKKRSSL HATKPSKKPK KKPFQLNRLP GLSEDLKTMR KIRFVVNDPY ATDYSSGEED  60
VETSRRRKRY VCEIDRPFSP ATAQAESESS YVQESRNNGG SKKALSGKAS QVVGRSSVTK  120
PVGVRQRKWG KWAAEIRHPI TKTRTWLGTY ETLEQAADAY ANKKLEFDAL AAACSAAPCD  180
STASNETVSI ASNVEAVSSI DRDMKVTDSK KPSFDFNFAD LQIPDMGCFI DESLIPNACE  240
LDFFLTEEKD DQLLDDYCGI DDMNIIGLEC DGPSELPDYD FSDVEIDLGL IGTTIDKFAF  300
VDHLATSTTT PLNIACP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078006001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895730.0AC189573.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644824.10.0ethylene-responsive transcription factor ERF119
SwissprotQ9LUA21e-149EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLA0A078FKD80.0A0A078FKD8_BRANA; BnaA06g33270D protein
TrEMBLA0A3P5YZ330.0A0A3P5YZ33_BRACM; Uncharacterized protein
STRINGBo7g082250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-149ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]