PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078166001
Common NameGSBRNA2T00078166001, LOC106370262
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 290aa    MW: 33158.1 Da    PI: 6.0138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078166001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10112158455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  GSBRNA2T00078166001 112 EHVIAERKRREKLSEKFIALSALLPGL-----KKADKSTVLDDAISRLKQLQ 158
                          699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.227108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15111174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-15112173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-8112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-9113162No hitNo description
SMARTSM003532.7E-12114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDEDFFLTDF SLEDIDFDFN IYEETNVSPV EASIHTERAQ FIEHQVPLNY LNEKPKPVVK  60
INNKPRVISF DFSSNVSSSP AREDIIMDQL VTRGTKRKSC SLAKRSPVFA KEHVIAERKR  120
REKLSEKFIA LSALLPGLKK ADKSTVLDDA ISRLKQLQEQ IRKLKEEKET TRHMESMILV  180
KKSKVFLDEG TFLSSSSSSD HEQFDQPLPE IEAKVAQNEV LIRIHCEKSK GSMIDILNTI  240
ENFQLRVENS IVLPFGESIL DITILAQMRK DFLVSALEDF VRNLRLAMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121ERKRRE
2117122RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078166001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665755.10.0transcription factor bHLH19
SwissprotQ1PF161e-146BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A078FH350.0A0A078FH35_BRANA; BnaA09g42370D protein
STRINGBra039926.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-126bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]