PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078261001
Common NameGSBRNA2T00078261001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 181aa    MW: 20709.7 Da    PI: 10.1457
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078261001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70252.81.4e-16662563
               DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasska 63
                         + +C+dCGnqakk+C+++RCRt  +++ +  +     tWvpa++r+++qq ++++++k 
  GSBRNA2T00078261001  6 GRRCEDCGNQAKKECVYMRCRTLLQNKILLRQE--NHTWVPAYRRSQKQQLQTQTHQKG 62
                         569************************987664..56*********9988777665544 PP
2DUF70284.92e-266912994154
               DUF702  94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          +  + +++ +++P+e+ss a frcv+vss+ddg+e++aYqt+v+igGhvf+GiL+dqGle+
  GSBRNA2T00078261001  69 KRVRIHTSRRHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQGLEK 129
                          44556677788***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.5E-366128IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.6E-12948IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.6E-3079127IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MMMIMGRRCE DCGNQAKKEC VYMRCRTLLQ NKILLRQENH TWVPAYRRSQ KQQLQTQTHQ  60
KGLATINPKR VRIHTSRRHF PAELSSLADF RCVKVSSIDD GKEQYAYQTT VNIGGHVFRG  120
ILHDQGLEKV VVDHQSTHHL HNKHHDQGLL PPSSSPCPLM ITSPFTDFMS GTRFSSNQKS  180
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078261001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509960.11e-122PREDICTED: protein SHI RELATED SEQUENCE 3
SwissprotQ9SJT85e-81SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A078FLM01e-134A0A078FLM0_BRANA; BnaA09g43210D protein
STRINGBostr.5022s0092.1.p3e-80(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.12e-74SHI-related sequence3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]