PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078562001
Common NameGSBRNA2T00078562001, LOC106379141
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 190aa    MW: 21216.4 Da    PI: 6.1456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078562001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.2e-1587137255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr++  +g+++AeIrdp   g k  r++lg+f +  +Aa+a++ a+ kl+g
  GSBRNA2T00078562001  87 HYRGVRRRA-WGKFAAEIRDP---GkKGSRVWLGTFESGVDAARAYDCAAFKLRG 137
                          7*****777.**********9...6556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-3086146IPR001471AP2/ERF domain
PfamPF008477.1E-1187137IPR001471AP2/ERF domain
SMARTSM003801.3E-3387151IPR001471AP2/ERF domain
PROSITE profilePS5103223.80287145IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2287146IPR016177DNA-binding domain
CDDcd000183.35E-2787145No hitNo description
PRINTSPR003671.4E-128899IPR001471AP2/ERF domain
PRINTSPR003671.4E-12127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MATFEESSDL DAIQKHLFED FMVSDSFMGD FDFDASCVSG LWCIEPAMNQ VPKQEPDSSS  60
AHETDQTVST KKKSKGRFHE EEEEQRHYRG VRRRAWGKFA AEIRDPGKKG SRVWLGTFES  120
GVDAARAYDC AAFKLRGRKA VLNFPLDAGK YEAPANSGRR RKRSDAKEEL QRSQGNSSSS  180
SIDGETTCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2786146464ATERF1
3gcc_A3e-2786146464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.145471e-168seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078562001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507111e-109AY350711.1 Sisymbrium irio clone BAC Sio11E11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618945.11e-139PREDICTED: ethylene-responsive transcription factor ERF106-like isoform X1
RefseqXP_013674608.11e-139ethylene-responsive transcription factor ERF106 isoform X1
SwissprotQ9LY054e-87EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A078FLW01e-137A0A078FLW0_BRANA; BnaC02g01530D protein
TrEMBLA0A0D3AI371e-137A0A0D3AI37_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D1K31e-137A0A3P6D1K3_BRAOL; Uncharacterized protein
STRINGBo2g008700.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.13e-88ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]