PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00078601001

Common Name

GSBRNA2T00078601001, LOC106399861

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 377aa MW: 42385.1 Da PI: 7.2099

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00078601001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.1e-32	195	249	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ GSBRNA2T00078601001 195 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 249 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.48E-17	194	249	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-28	194	250	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-23	195	250	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-8	199	248	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-20	279	326	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MDNINFETSN ASQGSRLHLH SQSQPPQLFN LQDVNMNHYN QSSPWTSETF SGYTPYDCTA 60 NQSLSVQCSS SKPNHALFHP YHHDQSSDHP SEDQSQSMVP MQLLQDQYLK PLYQKSCAND 120 FAATNASSSS YSLSFDASQD PQELCRRTYS TSNVTQLHFS SSHHHAKQTH PRFSSHSFSA 180 HGGSMAPNCG TVGNKTRIRW TQDLHEKFVE CVNRLGGADK ATPKAILKLM DSEGLTIFHV 240 KSHLQKYRIA KYIPDYQEGK FEKGSCSKEL SQLDTKTGVQ IKEALQLQLD VQRHLHEQLE 300 IQRNLQLRIE EQGKQLKIMI EQQQKTKECL LLKSPNAEAS LSLSASDHSP PPFSIQDAEA 360 LMLKTYGDTQ SQSKIS*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MDNINFETSN ASQGSRLHLH SQSQPPQLFN LQDVNMNHYN QSSPWTSETF SGYTPYDCTA  60
NQSLSVQCSS SKPNHALFHP YHHDQSSDHP SEDQSQSMVP MQLLQDQYLK PLYQKSCAND  120
FAATNASSSS YSLSFDASQD PQELCRRTYS TSNVTQLHFS SSHHHAKQTH PRFSSHSFSA  180
HGGSMAPNCG TVGNKTRIRW TQDLHEKFVE CVNRLGGADK ATPKAILKLM DSEGLTIFHV  240
KSHLQKYRIA KYIPDYQEGK FEKGSCSKEL SQLDTKTGVQ IKEALQLQLD VQRHLHEQLE  300
IQRNLQLRIE EQGKQLKIMI EQQQKTKECL LLKSPNAEAS LSLSASDHSP PPFSIQDAEA  360
LMLKTYGDTQ SQSKIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-23	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-23	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-23	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-23	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-23	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-23	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-23	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-23	195	252	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00078601001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619399.1	0.0	PREDICTED: transcription repressor KAN1-like
Refseq	XP_013619400.1	0.0	PREDICTED: transcription repressor KAN1-like
Refseq	XP_013695760.1	0.0	myb family transcription factor PHL5
Swissprot	Q0WVU3	0.0	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A078FP18	0.0	A0A078FP18_BRANA; BnaC02g01850D protein
TrEMBL	A0A0D3AI07	0.0	A0A0D3AI07_BRAOL; Uncharacterized protein
STRING	Bo2g007410.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-179	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	106399861

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]