PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078618001
Common NameGSBRNA2T00078618001, LOC106377818, LOC106398454
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 253aa    MW: 28917.8 Da    PI: 5.2836
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078618001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93e-141058249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                         rien++ r++ f +R +g++KKA+EL +LC+ ++++  f   + kl  +
  GSBRNA2T00078618001 10 RIENQRARNTAFKRRTQGLIKKAKELTILCGLDACLTFFNlDDAKLVAW 58
                         8***********************************9886233455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.652149IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-12160IPR002100Transcription factor, MADS-box
CDDcd002667.21E-22283No hitNo description
PRINTSPR004044.8E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-19395IPR002100Transcription factor, MADS-box
PfamPF003199.0E-151058IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAKEKMKLTR IENQRARNTA FKRRTQGLIK KAKELTILCG LDACLTFFNL DDAKLVAWPS  60
KEVAESLMDR FYSLPSYERN MKAETQESFL KTNIKKIQKK LADCRVSVAE LEMEHLMFDL  120
ENGRSLDDFS QSEIESLRSY TNKKIMGLNK DLGYPEHAYT SVNEPFPGVD QTPKVLDVAF  180
EREHCSNLMG SRCIYLMDKW FFDDPKVQED GNGNHLPKLV HRFDLNMEPS DDEEDMETYK  240
GESGKSGGAS DA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078618001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013694459.10.0MADS-box transcription factor PHERES 2-like
TrEMBLA0A078FI320.0A0A078FI32_BRANA; BnaC02g01970D protein
TrEMBLA0A3P6CXW20.0A0A3P6CXW2_BRAOL; Uncharacterized protein
STRINGBo2g007250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.17e-65AGAMOUS-like 96
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]