PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078905001
Common NameGSBRNA2T00078905001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 548aa    MW: 60007.9 Da    PI: 7.401
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078905001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31209266260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  e+s+ d+++++i+Y+g+H+h+k
  GSBRNA2T00078905001 209 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFETSH-DGRITDIIYKGTHDHPK 266
                          8***************************************9.***************85 PP
2WRKY107.28.2e-34377435159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSBRNA2T00078905001 377 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 435
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.905203267IPR003657WRKY domain
SuperFamilySSF1182902.62E-24206267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-26207267IPR003657WRKY domain
SMARTSM007747.3E-33208266IPR003657WRKY domain
PfamPF031061.7E-23209265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37362437IPR003657WRKY domain
SuperFamilySSF1182901.7E-29369437IPR003657WRKY domain
PROSITE profilePS5081138.629372437IPR003657WRKY domain
SMARTSM007743.1E-39377436IPR003657WRKY domain
PfamPF031064.4E-26378435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MDLPQANNDR EELQVDCSAT VDPTARHNSA GGGGGGGARY KLMSPAMLPI SRSTTNITIP  60
PGLSPTSFLE SPVFISNIKP EPSPTTGSLF KPRPVHVSSS SYTGRAFHQN TFTEHNSSEF  120
EFRPPASNMV YAELDKHKRE PPVQFQAQGH GASHSPEATA SSSEPSRPTP PVQTPPTSSD  180
IPAGSDQEES VQTSQNEPRG SAPPTVLADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE  240
VKKLFETSHD GRITDIIYKG THDHPKPQPG RRNSGGVGMA AQEERVGKYP PMTRRDGEKG  300
VYSLSQAIEQ TGNAEVASTT NDGGDVAASN RNKDDPEDDD PYTKRRRLDG NMEITPLVKP  360
IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTAPGCPV RKHVERASHD  420
PKAVITTYEG KHNHDVPTSK SGSSNHHEIQ PRFRPPDETD TISLNLGVGI SSNGPNENQQ  480
LVNQTHPNGV GFRFVHAAPV STYYASMNQY GPRETQSETQ NGDISSLNHS SSYPYPHNNI  540
GRIQTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37207437877Probable WRKY transcription factor 4
2lex_A1e-37207437877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343347KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.71580.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078905001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529170.0AK352917.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-11-P10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109173.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A078FN360.0A0A078FN36_BRANA; BnaA08g14350D protein
STRINGBra010431.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]