PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00079262001
Common NameGSBRNA2T00079262001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 373aa    MW: 42288.5 Da    PI: 4.2543
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00079262001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3169.15e-52361861142
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksn.........ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekg 81 
                          ++lkkrmwkd++l+++lk++kk+      ++ ++++s+         ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekg
  GSBRNA2T00079262001  36 DDLKKRMWKDRNLMCKLKQQKKDDHDLSYPSSSTSSSSsspsssaivRRAEASRRKKMARSQDSVLKYMMKIMEVCKARGFVYGIVPEKG 125
                          79********************9887777764444444669999********************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HH CS
                 EIN3  82 kpvegasdsLraWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDT 142
                          kpv+g+sdsLr+WWke+v+fd+++p+a+++y   +a++li+s++++    + + ++ + +l +T
  GSBRNA2T00079262001 126 KPVTGSSDSLRRWWKENVQFDQTAPTAVADYltlAAAQLISSSDERF---SGRDQTHVAQLGET 186
                          **********************************99****9988777...56666666666665 PP
2EIN329.31.5e-09194264279354
                          XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
                 EIN3 279 eqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354
                          ++++dv++++++         + +++++ +krk k++e++ ++ ++v +tcq+s++++s+++l f dkn ++ +e+
  GSBRNA2T00079262001 194 SDDDDVDEEDQEP----ARIIALDQEQMGNKRKGKFVEEEGAMLSNV-YTCQNSSCPSSDVSLRFVDKNLRTGHEM 264
                          3345555444444....2333446799*********99999888865.************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048736.4E-5136188No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVEVQDMEPL SPIQDDDDCD DEEDELDRVN EDISYDDLKK RMWKDRNLMC KLKQQKKDDH  60
DLSYPSSSTS SSSSSPSSSA IVRRAEASRR KKMARSQDSV LKYMMKIMEV CKARGFVYGI  120
VPEKGKPVTG SSDSLRRWWK ENVQFDQTAP TAVADYLTLA AAQLISSSDE RFSGRDQTHV  180
AQLGETLLKR LKISDDDDVD EEDQEPARII ALDQEQMGNK RKGKFVEEEG AMLSNVYTCQ  240
NSSCPSSDVS LRFVDKNLRT GHEMECLYGT QEPIYQSSVS SDGLVRSITT SDDDYSASSK  300
GKDTIDYLNQ DGNWLDYLWF ERLHDFSCSD QATAVDLNQL PDHSDSNPTV NEEEFSLWDM  360
GCEDRDIYMS QD*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00079262001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022567699.11e-122ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ52e-81EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A078FNT70.0A0A078FNT7_BRANA; BnaC03g49200D protein
STRINGBra024354.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16143412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.15e-84EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]