PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00079266001
Common NameGSBRNA2T00079266001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 283aa    MW: 31828.2 Da    PI: 8.2016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00079266001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20108158256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+G+r+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ k++ge
  GSBRNA2T00079266001 108 LYRGIRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDQAAHKIRGE 158
                          59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.15E-34107166No hitNo description
PROSITE profilePS5103222.853108165IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-22108165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-32108166IPR001471AP2/ERF domain
SMARTSM003801.6E-37108171IPR001471AP2/ERF domain
PfamPF008471.5E-13109158IPR001471AP2/ERF domain
PRINTSPR003674.3E-11109120IPR001471AP2/ERF domain
PRINTSPR003674.3E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MKIALNMNGY LEEFMKALEP FRKVTSSPSP SSSKPIPITP DNQTLPVCNQ TGPIGLNQLT  60
PTQILQIQTE LHLRQNQARR GCSGHNVNVL NAKPTLMKKT NVTKPAKLYR GIRQRHWGKW  120
VAEIRLPKNR TRLWLGTFET AEEAALAYDQ AAHKIRGENA RLNFPNIARR GEYKKTLSPS  180
VNAKIESICN SSELPMSELK KPAETEEVFF GFHYTDPKVE QEREAPDEFG YGSGYSPESD  240
ITLLDIISNE WMKEDGSFCM GLQKCPSFEI DWDAIDKLSG SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-22106172370ATERF1
3gcc_A7e-22106172370ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00079266001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022551130.10.0ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-126ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A078FNV90.0A0A078FNV9_BRANA; BnaC03g49170D protein
TrEMBLA0A3P6AUY90.0A0A3P6AUY9_BRAOL; Uncharacterized protein
STRINGBo00790s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-101ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]