PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00079331001
Common NameGSBRNA2T00079331001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 455aa    MW: 51204.1 Da    PI: 6.932
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00079331001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14190249155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  GSBRNA2T00079331001 190 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 249
                          57*******************666664478446**********99*************98 PP
2AP249.31.2e-15294343355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  GSBRNA2T00079331001 294 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 343
                          9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-11190249IPR001471AP2/ERF domain
CDDcd000182.34E-21190259No hitNo description
SuperFamilySSF541712.09E-16190258IPR016177DNA-binding domain
SMARTSM003802.5E-26191263IPR001471AP2/ERF domain
PROSITE profilePS5103218.755191257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-15191257IPR001471AP2/ERF domain
PRINTSPR003673.4E-6192203IPR001471AP2/ERF domain
CDDcd000189.65E-11292351No hitNo description
SuperFamilySSF541719.15E-18292352IPR016177DNA-binding domain
SMARTSM003803.3E-30293357IPR001471AP2/ERF domain
PROSITE profilePS5103219.269293351IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18293351IPR001471AP2/ERF domain
PfamPF008475.9E-10294343IPR001471AP2/ERF domain
PRINTSPR003673.4E-6333353IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MANWLTFALS PMEMMKSPDH THFVSYDDSS TPYLIDNLYV LKEEAETSMA DSTNLASFFN  60
PQTHSPTHIP KLEDFLGDSS SFVRFPDNQP DTLDSSSLTQ IYDPRHLTGV TGLFSDRQHD  120
FKAVEGGVSE GCTKEGALSL AVNNTDGERV RNSRKVKVSK KQAKAVETTS TDDLTKKNKK  180
VAESFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQVYLGGY DKEDKAARAY  240
DLAALKYWGP AATTNFQIAT YSKELEEMNH MTKQEFIASI RRKSSGFSRG ASMYRGVTRH  300
HQQGRWQARI GRVAGNKDLY LGTFATEEEA AEAYDIAAIK FRGINAVTNF EMNRYDVEAI  360
MNSSFPVGGS AVKRHKQLSL ESPPPLPPSD DDHNIQQLLL PSSSVELDPN SIPCGIPFDP  420
SVLYLHQNFF QHYPDPTVPM NQADQFFMWS NQSY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Confined to the central region of inflorescence ane floral meristems, progressively restricted to the innermost cells of the dome. Also detected in developing stamen locules and later in sporogonous cells within locules. In carpel primordia, found in placenta and in young ovule primordia. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00079331001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534040.0AK353404.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628400.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6J9N80.0AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A078FNZ30.0A0A078FNZ3_BRANA; BnaC03g48820D protein
STRINGBo3g099090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.10.0AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]