PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00079729001

Common Name

GSBRNA2T00079729001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 898aa MW: 99000.3 Da PI: 5.2826

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00079729001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.9	1.5e-26	560	621	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg...........vclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lg vc+T+LKriCRq+GI+RWP+Rki+++ GSBRNA2T00079729001 560 EKNVSLSVLQQHFSGSLKDAAKSLGgeistfvsnlaVCPTTLKRICRQHGIMRWPSRKINKV 621 89**********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.05	543	641	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-25	562	621	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.11E-22	788	882	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-23	795	876	No hit	No description
SMART	SM00666	5.5E-24	797	879	IPR000270	PB1 domain
PROSITE profile	PS51745	22.018	797	879	IPR000270	PB1 domain
CDD	cd06407	5.78E-36	798	878	No hit	No description
Pfam	PF00564	2.2E-17	799	878	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MEHPFASRDK VFGYQDMSTE EMDGFSFGSG VRNLISDDMF NSSSNSELMN FDSFSTWCNS 60 PSSATDILFA QYGLSTTSQP MPFGAITSSG LTRSFHDLES SYYGEERLSI QETSSQFHRS 120 FDGDELTGKR RRVAIPNLMN CTIPRSLSHS LDEKMLKALS LFLESSGSGE GILAQVWTPI 180 KIGDQHVLST CDQAYLLDPR LSQYREVSRK FTFASEANQC SFPGLPGRVF ISGVPEWTSN 240 VVYYKTDEYL RMKHAIDNEV RGSIAIPILE ASGTTCCAVM ELVTSKEKPN FDTEMDSVCR 300 ALQAVNLRTS ASPRPQFLSS NQRDALAEIQ DVLLAVCHAH RLPLALAWIP CSYGKGGKNQ 360 SGESCVLCVE ETACYVNDTE MEGFVHVCLE HCLRAKEGIV GKAFVSNQPF FASDVKAYDI 420 SEYPLVQHAR KYGLNAAVAI KLRSTYTGED DYILELFLPV SMKGSLEQQL LLDSLSGTMQ 480 RICRTLRTVS DVGETNKEVS KAKCSGNFRT MLSDSELNST RNIFSDMSSD KDNSSAGSQG 540 TYEQEMSKAR TQEKKKSTTE KNVSLSVLQQ HFSGSLKDAA KSLGGEISTF VSNLAVCPTT 600 LKRICRQHGI MRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLKFDSATGE FVAVCPFIKE 660 LDTQKDPVRG QEDVAAQDTS FELLEAKSVD NEIKLEEDII TNGSFVEVNA SGQQWAWMAE 720 QSSFHCSEGI KNNGNLSSQA IRCSGSINEP NQSVSCSMSG SSNGSGAVML RSSSTSMDDS 780 NQVRTQKSNS SESGSTKLTV KATYREDTIR FKFVPSLGCS QLYKEVGKRF KLQEESFQLK 840 YLDDEEEWVM LVTDSDLQEC LEILYGMGKH TVKFLVRDLP APIGSSAGSN CYLGTGL*

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MEHPFASRDK VFGYQDMSTE EMDGFSFGSG VRNLISDDMF NSSSNSELMN FDSFSTWCNS  60
PSSATDILFA QYGLSTTSQP MPFGAITSSG LTRSFHDLES SYYGEERLSI QETSSQFHRS  120
FDGDELTGKR RRVAIPNLMN CTIPRSLSHS LDEKMLKALS LFLESSGSGE GILAQVWTPI  180
KIGDQHVLST CDQAYLLDPR LSQYREVSRK FTFASEANQC SFPGLPGRVF ISGVPEWTSN  240
VVYYKTDEYL RMKHAIDNEV RGSIAIPILE ASGTTCCAVM ELVTSKEKPN FDTEMDSVCR  300
ALQAVNLRTS ASPRPQFLSS NQRDALAEIQ DVLLAVCHAH RLPLALAWIP CSYGKGGKNQ  360
SGESCVLCVE ETACYVNDTE MEGFVHVCLE HCLRAKEGIV GKAFVSNQPF FASDVKAYDI  420
SEYPLVQHAR KYGLNAAVAI KLRSTYTGED DYILELFLPV SMKGSLEQQL LLDSLSGTMQ  480
RICRTLRTVS DVGETNKEVS KAKCSGNFRT MLSDSELNST RNIFSDMSSD KDNSSAGSQG  540
TYEQEMSKAR TQEKKKSTTE KNVSLSVLQQ HFSGSLKDAA KSLGGEISTF VSNLAVCPTT  600
LKRICRQHGI MRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLKFDSATGE FVAVCPFIKE  660
LDTQKDPVRG QEDVAAQDTS FELLEAKSVD NEIKLEEDII TNGSFVEVNA SGQQWAWMAE  720
QSSFHCSEGI KNNGNLSSQA IRCSGSINEP NQSVSCSMSG SSNGSGAVML RSSSTSMDDS  780
NQVRTQKSNS SESGSTKLTV KATYREDTIR FKFVPSLGCS QLYKEVGKRF KLQEESFQLK  840
YLDDEEEWVM LVTDSDLQEC LEILYGMGKH TVKFLVRDLP APIGSSAGSN CYLGTGL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	132	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00079729001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	1e-167	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	AY102562	1e-167	AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY102563	1e-167	AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY649251	1e-167	AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.
GenBank	CP002685	1e-167	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013630436.1	0.0	PREDICTED: protein NLP8-like isoform X1
Refseq	XP_013683827.1	0.0	protein NLP8-like isoform X1
Refseq	XP_022554877.1	0.0	protein NLP8-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A078I318	0.0	A0A078I318_BRANA; BnaC03g24230D protein
STRING	Bo3g036620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]