PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00079932001
Common NameGSBRNA2T00079932001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 206aa    MW: 24386.3 Da    PI: 9.5563
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00079932001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.6e-121036127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++ e C+f+++tG C +G+rC+F+H++
  GSBRNA2T00079932001 10 PGKEDCSFYLKTGRCDFGERCRFNHPK 36
                         5789*********************96 PP
2zf-CCCH24.26e-083755927
                         GGGTS--TTTTT-SS-SSS CS
              zf-CCCH  9 fartGtCkyGdrCkFaHgp 27
                         f+ +G CkyG++CkF H++
  GSBRNA2T00079932001 37 FFLGGKCKYGSTCKFKHSK 55
                         8889*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-5936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263937IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-61135IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-91136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-51534IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-43656IPR000571Zinc finger, CCCH-type
SMARTSM00356193755IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.0853856IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRDDEYPVRP GKEDCSFYLK TGRCDFGERC RFNHPKFFLG GKCKYGSTCK FKHSKEGDST  60
EAMRQVIAYK LLYYSDQPNV KNLTESLLQD QKRQRTESSY GPSQEKRAKT IDKQRREAQN  120
NLQEERLMIP ENRNVNAQEQ ADMERQNREA QEKAQEERRR QIDNERRQAR LRLERMKPRV  180
LTSNVDQLRE ALRDIGIERK EGDGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00079932001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103019.11e-121PREDICTED: putative zinc finger CCCH domain-containing protein 9
TrEMBLA0A078I0A21e-149A0A078I0A2_BRANA; BnaA07g07840D protein
STRINGBra030150.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-15C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]