PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00079935001

Common Name

GSBRNA2T00079935001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 128aa MW: 14303.6 Da PI: 7.8092

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00079935001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	75.2	1.2e-23	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C +++ C+++C +a yfp+e + +++++ klFG+ n+++++k +p+e+++ ++ss++ e+ a+++d + G +gvi+kl+ +++ + GSBRNA2T00079935001 12 RCCVCIEKNKICTRKCEFAAYFPNEMQGDYEAATKLFGTPNITRMMKLAPHEQKHLLASSILKEGVAWTDDNIGGGCGVIQKLRGEIKLH 101 6***************************************************************************************** PP DUF260 91 kaelallkee 100 + l+ ++++ GSBRNA2T00079935001 102 EDYLSDIRKK 111 *999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.805	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-19	12	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MEAVGTDTKH GRCCVCIEKN KICTRKCEFA AYFPNEMQGD YEAATKLFGT PNITRMMKLA 60 PHEQKHLLAS SILKEGVAWT DDNIGGGCGV IQKLRGEIKL HEDYLSDIRK KISEEKKELV 120 LLSNPYI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00079935001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022564984.1	6e-72	LOB domain-containing protein 5-like
Swissprot	Q9C8V8	2e-35	LBD5_ARATH; LOB domain-containing protein 5
TrEMBL	A0A078I572	4e-90	A0A078I572_BRANA; BnaA07g07870D protein
STRING	Bo9g027690.1	9e-39	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G36000.1	8e-38	LOB domain-containing protein 5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]