PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00079936001
Common NameGSBRNA2T00079936001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 255aa    MW: 29174.2 Da    PI: 6.77
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00079936001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-061741327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          + C +++++G C +G +C+++H+p
  GSBRNA2T00079936001 17 VADCYYYLKNGGCFFGRSCRYNHPP 41
                         689********************97 PP
2zf-CCCH24.64.4e-086385527
                         --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                         +C  ++ tG+C+yG+rC F+H+p
  GSBRNA2T00079936001 63 NCEQYLHTGQCSYGSRCWFNHPP 85
                         7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.3E-41441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1691442IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-41741IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-51741IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-55183IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-45885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.535886IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-56284IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-66385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MRHELGQSSE YPVRTGVADC YYYLKNGGCF FGRSCRYNHP PRNQLGDDTV QPSAYKVRLG  60
ATNCEQYLHT GQCSYGSRCW FNHPPARTIP DYPSVIQDVS DEVGAGQNSW LQRRRAQRGK  120
IDCGQRRVSE EERTLRETVP CSVLVLYSQE RQTHDLEEQK QRERVYENLR IDQIKASVQS  180
DGGIQTEQRL EIPENHSVNA QENLQEQADV EKEKRKAQEK AQEERSRSLT GNVDQLIQSL  240
QDNIGIERKR GDGA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00079936001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018508238.11e-172PREDICTED: putative zinc finger CCCH domain-containing protein 9 isoform X3
TrEMBLA0A078I4090.0A0A078I409_BRANA; BnaA07g07880D protein
STRINGBra030148.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.33e-16C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]