PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00079986001
Common NameGSBRNA2T00079986001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 1128aa    MW: 127269 Da    PI: 7.9092
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00079986001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-074681340
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                          W +eE e+++++ +++G++ Wk++a  +   R+++++
  GSBRNA2T00079986001 46 QWNKEELERFYEGYRKFGKE-WKKVAGFVH-SRSAEMV 81
                         6*******************.********9.9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.24E-94292IPR009057Homeodomain-like
SMARTSM007170.0034391IPR001005SANT/Myb domain
PfamPF002494.5E-64681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-44682IPR009057Homeodomain-like
CDDcd001673.90E-44789No hitNo description
SMARTSM011357.0E-61595696IPR033471DIRP domain
PfamPF065845.5E-30595694IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1128 aa     Download sequence    Send to blast
MAPSRSTKSK YKRTPRPKDV SPHKEEESMS KTKPRKRKLS DMLGPQWNKE ELERFYEGYR  60
KFGKEWKKVA GFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLTAMMTD HYAVLHGGSD  120
SEQEKNETLR SASKRSKLKS SDHPSAGLEG LSDRLQFRSS SGYLPSLKKR RTETMPRAVG  180
KRTPRIPVSY TPEKDTRERY MSPVKKSLNQ KGDDTDDDME HEIALALTEA SQRGGSTKNP  240
HTPNRKSKMF SPDTKSEIMR ADIDMAIAKL RATDTEDAQC EPSLESTEAE NVDNPGNRNE  300
LTNGEDRSAM KEKQYYRRRF GIKEDDSKEA CSGTDEAQSL GTLDEKFKQE GDGKFLKFTY  360
RSSRRKSKKS LFTADEDTAC DALQTLADLS LMMPETATDT ESSVQAEEKR AGKASDYKET  420
DLASMSKRGS LRKWKQKRPV CNDLCNTEPE RKSPSSSVIR KGRQKASPAK VPKDELAAIS  480
QVTEPSKNKG IGEEIKPVGR GKRSASIRNS YEKKCVKPQD RTSSSNNMVD DDESAPSTAA  540
TQKEVNLPTK VRSRRKIVTE KPLTIDDVKK SEILEKFSHC ISSFKARRWC LFEWFYSAID  600
YPWFARQEFV EYLDHVGLGH VPRLTRVEWG VIRSSLGKPR RFSQQFLKEE KEKLYLYRDS  660
VRKHYDELNT GMREGLPMDL ARPLNVSQRV ICLHPKSREI HDGSVLTVDH CRYRIQFDNP  720
ELGVEFVKDT ECMPLNPLEN MPASLAKHYV LSNHHRQNSS EEKMHERVKE SMPEGYPKLS  780
CEAGYPQSSP NYIINNSLKQ EKVEISSSDP QAQNGVDEAL AVQLFNSQPS NIGHIHAREA  840
DVQALSELTR ALDKKELVLR ELNYMNNEVV ESEKDGHNAL KDSESFKKQY AAVLFQLSEI  900
NEQARVYEGN VSLALLGLRQ RNTYQENVPS SSITHMSNSG EPDGQLTYVD NDASDTNGFH  960
VSEIVDISRV KARKMVFRAI QALALLRKDE NNVVNIEEAI DFVNNQLSTD ESEGSSSVQQ  1020
TQASQDQRLP STPNPSSSTQ HADDSHVNPL DQNDLQVPSE LVSRCMATLL MIQRCTERQF  1080
PPSEVAQVLD SAVASLQPCC SQNLPIYTEI QKCMGIIRNQ ILALVPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338PRKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.165870.0flower| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00079986001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5834970.0AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013692581.10.0protein ALWAYS EARLY 3-like
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A078I3860.0A0A078I386_BRANA; BnaC05g30570D protein
STRINGBra031282.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127142427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]