PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080098001
Common NameGSBRNA2T00080098001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 262aa    MW: 30414.6 Da    PI: 10.1483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080098001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-152369147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W   Ed +l ++v+++G+ +W+ Ia++m+ +Rt+k+c++rw++ 
  GSBRNA2T00080098001 23 RGHWRVSEDSQLMELVALYGPQNWNHIAEKMQGRRTGKSCRLRWFNQ 69
                         899*****************************9***********996 PP
2Myb_DNA-binding50.16.2e-1677120247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
  GSBRNA2T00080098001  77 REFSVEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 120
                          5799*****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5791870IPR017930Myb domain
SMARTSM007172.1E-122272IPR001005SANT/Myb domain
PfamPF002495.2E-152369IPR001005SANT/Myb domain
SuperFamilySSF466894.59E-2623117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-222477IPR009057Homeodomain-like
CDDcd001674.53E-102668No hitNo description
PROSITE profilePS5129424.98271125IPR017930Myb domain
SMARTSM007171.4E-1375123IPR001005SANT/Myb domain
PfamPF002492.4E-1277120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2078125IPR009057Homeodomain-like
CDDcd001672.35E-978121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLKESDGFKK KKKQRGSSRF CSRGHWRVSE DSQLMELVAL YGPQNWNHIA EKMQGRRTGK  60
SCRLRWFNQL DPRINKREFS VEEEERLLAA HRAFGNKWAM IAKLFNGRTD NALKNHWHVL  120
MARKLRQQST SYLRRFNESS YNPTSDHKTF TLPPGLYDGE DMNLVKKSWK TLKEEYTTNL  180
KAQYLQEEYC SLRMPMQGPH HHCSTFPADS LALTLHVSIQ EPSLSSSSCA EHRVVARYFE  240
TTKPPAFIDF LGVGHHQSPK I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-28231254105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-28231254105C-Myb DNA-Binding Domain
1msf_C4e-28231254105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080098001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665076.10.0transcription factor MYB105-like
SwissprotQ9SEZ42e-60MY105_ARATH; Transcription factor MYB105
TrEMBLA0A078I0K50.0A0A078I0K5_BRANA; BnaA02g29620D protein
STRINGBra033078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-133myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]