PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080526001
Common NameGSBRNA2T00080526001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 320aa    MW: 36499.3 Da    PI: 6.8839
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080526001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.9e-181764350
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         ++ +s + +++  R+ +i+KKA+EL +LCd+e++vi ++++g+ ++++
  GSBRNA2T00080526001 17 SSTHSLAATSLKSRLLTIFKKAQELTTLCDIEACVIHYGPDGEQKTWP 64
                         7788999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.12E-132799IPR002100Transcription factor, MADS-box
PfamPF003191.6E-92963IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRSPRPSSCS KCSSSPSSTH SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEQ  60
KTWPEDRDKV KDLALRYIQL DEAKRRKKSV NLHEFLNKMK DKKTMINNFN KKAKRNVEEL  120
KYPISDHYSP HQINQLIQSL ELSYSTLQER RRFLAAKANL EDRQHSFNPS PFTQESVLKN  180
QELCVNDNNN NSFQHLCNMM CMGNINNVQH PWVSNAHPPE LQEPNQLMQH ELNYGFDQNM  240
CMSDPTNSFS VVDPCLPNML PDDFCFDFQD PYGGNVVGNP SFSQDFFPDM SSSYVYGSRL  300
LQDLGLLPVL SSVLLHLLS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080526001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139966.10.0PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FLL01e-54AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078I1840.0A0A078I184_BRANA; BnaA04g09950D protein
STRINGBra025607.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.13e-56AGAMOUS-like 78
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]