PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080532001
Common NameGSBRNA2T00080532001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 337aa    MW: 38262 Da    PI: 6.5023
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080532001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.59.4e-201866250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         +++++s + +++  R+ +++KKA+EL +LCd+e++vi ++++g+l++++
  GSBRNA2T00080532001 18 SSSSYSLAATSLNSRLLTVFKKAQELTTLCDIEACVIHYGPDGELKTWP 66
                         799*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.112769IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-1330101IPR002100Transcription factor, MADS-box
PfamPF003195.8E-103265IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MRPPSPRPSP SSKCSSSSSS SYSLAATSLN SRLLTVFKKA QELTTLCDIE ACVIHYGPDG  60
ELKTWPEDRD KVKDLALRYI QLDKAKRRKK SVNLHEFLNK MEDKKTMLHK FKKRAKKNVE  120
VLKYPISVHY SPDQINQLIQ SLELSYSKLQ ERHRFLAAKK QNESLNPNQF KQLPQESVLK  180
NHEVCVNDQN NNFQHLCVSA VQESGGSNYQ LMMPYSGGYD QSMCTVNNFQ DPCVSNIQDY  240
SVFPPELQES VSNYAFNQLM QHELFGFDQN MCMGDTTNSF NVVDPCLSDD FCFDFQDPYG  300
ANMVGNPSFS QDFYPDMSSS SVDENRLLQA STLPSL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080532001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139964.10.0PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FLL07e-71AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078I5520.0A0A078I552_BRANA; BnaA04g09910D protein
STRINGBra025609.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.12e-73AGAMOUS-like 75
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]