PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00080534001

Common Name

GSBRNA2T00080534001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 132aa MW: 15104.6 Da PI: 10.678

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00080534001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	43.8	6.8e-14	5	97	2	98
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 F +ly+i++d++ +++isws ++ n fvv+d +++ +++L k +n++ F+ +L gF++v + ++ eF+h+ F++g GSBRNA2T00080534001 5 FYIQLYKIVDDPSSDQIISWSkSSPNIFVVWDLKKLRRDILFKssGVLGRNLSEFIAKLRSHGFRSVLKGFGE-------LEFEHDDFTRGL 89 899****************6666***********9662245679*****************99.......********98 PP XXXXXXXX CS HSF_DNA-bind 91 kellekik 98 ++ +ki GSBRNA2T00080534001 90 VTKKTKII 97 77766664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.0E-11	1	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.9E-12	3	88	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.8E-14	3	88	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.2E-6	5	28	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.2E-11	5	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-6	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MISSFYIQLY KIVDDPSSDQ IISWSKSSPN IFVVWDLKKL RRDILFKSSG VLGRNLSEFI 60 AKLRSHGFRS VLKGFGELEF EHDDFTRGLV TKKTKIIKAF SDRFDAQIKA IKCRFKAKKA 120 SSSLKVEHLF P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00080534001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140184.1	8e-90	PREDICTED: heat stress transcription factor A-4a-like
TrEMBL	A0A078I403	2e-88	A0A078I403_BRANA; BnaA04g09890D protein
TrEMBL	M4EA04	2e-88	M4EA04_BRARP; Uncharacterized protein
STRING	Bra025611.1-P	3e-89	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	3e-13	Winged helix-turn-helix transcription repressor DNA-binding

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]