PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080614001
Common NameGSBRNA2T00080614001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 476aa    MW: 53045.6 Da    PI: 4.3627
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080614001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind51.82.2e-16441462102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-....HHHHHHHTHHHHSTT--HHHH......HHHHHHTTEEE---SSBTTTTXTTSEEE CS
         HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvld....eeefakkvLpkyFkhsnfaSF......vRQLnmYgFkkvkdeekkskskekiweF 81 
                          Fl+k+y++++d++++ ++sws+n+nsf+ +     +  ++ ++L + F+ + ++SF       +QLn++gF+kv+  +         weF
  GSBRNA2T00080614001  44 FLSKTYDMVDDPATDPIVSWSSNNNSFLPTFipsfSYLISADCLDSKFQWEFLSSFlvwtirNKQLNLFGFRKVDLYR---------WEF 124
                          9********************999998644400125566789**************99998889**********9988.........*** PP

                          EESXX.XXXXXXXXXXXXXXXX CS
         HSF_DNA-bind  82 khksF.kkgkkellekikrkks 102
                          +++ F + g+k+ll++i r+k 
  GSBRNA2T00080614001 125 ANEVFlRVGNKHLLKTITRRKP 146
                          ****9788***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-1239144IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-2040144IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.4E-1641144IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-1144144IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAGGNRSSTI DEAESGGGSV AMESKEIPQP QPVEVLSANA PPPFLSKTYD MVDDPATDPI  60
VSWSSNNNSF LPTFIPSFSY LISADCLDSK FQWEFLSSFL VWTIRNKQLN LFGFRKVDLY  120
RWEFANEVFL RVGNKHLLKT ITRRKPAHVH GHGQQHSNGQ NPSVSSCVEV GKFGLEEEVE  180
RLKRDKKVLM QELVRLRQQQ QSTDNNLQRM VQRLQGMENR QQQLMSFLAK AVQSPHFLSQ  240
FLQQQNQQSE SNGIVSSKDS ASPDGQIVKY QPPMHEQAKA MLKKLMKMEP YKTGDDGFHL  300
GDGTSTTTEM EISSNNVSGI TLQEMPTASD IQSSSLTGAT PENVTVAESP TPEEAIPSPD  360
VLSLPEFASI LPKKTTEMPS GNFMEPNMED FSYFLDSDLF IDGDFPFDID DIPSDPDLEP  420
SVDKYASLLE DILMSSPLPD DMDVTPCLID SLPPLDWIYI TQDQMPSPMS HLASF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.284841e-31seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080614001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0841101e-118AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBankCP0026841e-118CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D141e-118AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586097.10.0PREDICTED: heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A078I5910.0A0A078I591_BRANA; BnaA08g06910D protein
STRINGBra035507.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-165heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]