PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080677001
Common NameGSBRNA2T00080677001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 502aa    MW: 56266.4 Da    PI: 7.239
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080677001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-1680126148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WTteEde l +av  +  ++Wk+Ia+ ++  Rt+ qc +rwqk+l
  GSBRNA2T00080677001  80 KGGWTTEEDETLRQAVCTYNAKSWKKIAEFFP-DRTEVQCLHRWQKVL 126
                          688*****************************.************986 PP
2Myb_DNA-binding635.8e-20132178148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEde++v++vk++G+  W+tIa+ +  gR +kqc++rw+++l
  GSBRNA2T00080677001 132 KGPWTQEEDEKIVELVKKYGPAKWSTIAKSLE-GRIGKQCRERWHNHL 178
                          79******************************.*************97 PP
3Myb_DNA-binding56.47e-18184227146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          + +WT+eE+  l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
  GSBRNA2T00080677001 184 KEAWTPEEEIALMNAHRVHGNK-WAEIAKVLP-GRTDNSIKNHWNS 227
                          579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2175126IPR017930Myb domain
SuperFamilySSF466896.82E-1676132IPR009057Homeodomain-like
SMARTSM007171.3E-1379128IPR001005SANT/Myb domain
PfamPF002491.6E-1480126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2182138IPR009057Homeodomain-like
CDDcd001671.31E-1183126No hitNo description
PROSITE profilePS5129432.292127182IPR017930Myb domain
SuperFamilySSF466891.39E-32129225IPR009057Homeodomain-like
SMARTSM007178.6E-18131180IPR001005SANT/Myb domain
CDDcd001676.68E-15134178No hitNo description
PfamPF139211.8E-18135195No hitNo description
Gene3DG3DSA:1.10.10.606.6E-27139186IPR009057Homeodomain-like
SMARTSM007171.3E-16183231IPR001005SANT/Myb domain
PROSITE profilePS5129422.816183233IPR017930Myb domain
CDDcd001673.35E-12186229No hitNo description
Gene3DG3DSA:1.10.10.601.3E-23187232IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSFNFNPSSS SSRDEEVKKM EEEDECVENK QSTAASCSSV SEGSGGGGGS SFLKSSPAVA  60
SPPTVSPTHR RTSGPIRRAK GGWTTEEDET LRQAVCTYNA KSWKKIAEFF PDRTEVQCLH  120
RWQKVLNPDL IKGPWTQEED EKIVELVKKY GPAKWSTIAK SLEGRIGKQC RERWHNHLNP  180
GINKEAWTPE EEIALMNAHR VHGNKWAEIA KVLPGRTDNS IKNHWNSSLK KKSEFYQANG  240
ALPPSAAKNG VLDSATKRPL FYQRRDSAIQ INKPDEDRRD QLKSSVPLEE VVAASPLTSD  300
QLPRPEPSPE NGYHLYYKNH QTEYSMASEA DKQRMYGYEC GCSPSASPVI FFTPPPPSRK  360
EYFNGLRPTS PESYLREAAR TFPNTPSIFR KRRRRTVVVS DSDNKAAKTD EEGTKEAVVV  420
VDQKVNEFSE SPDIEEKESN DGSNAYNLSP PYRIRSKRTA VFKSRQLEFI SPEEAKADDD  480
DETKSSEKDK VLDGGDSQLP V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-69792325158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-69792325158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389393RKRRR
2389395RKRRRRT
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080677001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750358.20.0transcription factor MYB3R-3
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A078I1H30.0A0A078I1H3_BRANA; BnaA05g29060D protein
STRINGBra029762.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.20.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]