PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00080759001

Common Name

GSBRNA2T00080759001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 241aa MW: 27347.4 Da PI: 7.5066

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00080759001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	76.9	2.8e-24	90	181	3	92
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk.vy.lkky 90 ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al lGf +yve++ +y +ky GSBRNA2T00080759001 90 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALHVLGFGEYVEEVYsAYeQHKY 179 6899**************************************************************************998514423455 PP NF-YB 91 re 92 GSBRNA2T00080759001 180 ET 181 44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-38	87	218	IPR009072	Histone-fold
SuperFamily	SSF47113	4.69E-35	91	219	IPR009072	Histone-fold
Pfam	PF00808	1.6E-21	93	158	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MQRFIDPFGE KVPSTRLFLV SIFFPNQLVK KKRNGERKTA VQHVPILRRD SVSRFVSFPG 60 SPSLIRLRFD LLKLERKKTM DPMDIVGKSK EDASLPKATM TKIIKEMLPA DVRVARDAQD 120 LLIECCVEFI NLISSESNEV CNKEDKRTIA PEHVLKALHV LGFGEYVEEV YSAYEQHKYE 180 TMQDSQRSVK MNTGAEMTEE EAAAEQQRMF AEARARMNGG GVSVPQPEQQ LDTQQPNLQS 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-33	91	214	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.1961	0.0	flower\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00080759001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF428400	1e-132	AF428400.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds.
GenBank	AK227164	1e-132	AK227164.1 Arabidopsis thaliana mRNA for DR1-like protein, complete cds, clone: RAFL09-87-H07.
GenBank	AY087017	1e-132	AY087017.1 Arabidopsis thaliana clone 30536 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619027.1	1e-116	PREDICTED: protein Dr1 homolog
Refseq	XP_013674614.1	1e-116	protein Dr1 homolog
Swissprot	P49592	2e-98	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A078I4G1	1e-178	A0A078I4G1_BRANA; BnaC02g01260D protein
STRING	Bo2g008950.1	1e-154	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3828	26	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08190.1	2e-81	nuclear factor Y, subunit B12

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]