PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080902001
Common NameGSBRNA2T00080902001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 326aa    MW: 35522.6 Da    PI: 7.3706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080902001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037137159123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  GSBRNA2T00080902001 137 YQCKTCDRTFPSFQALGGHRASH 159
                          9***********99999998887 PP
2zf-C2H212.60.00041192214123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg  F++   L  H+r+H
  GSBRNA2T00080902001 192 HECGVCGAEFTSGQALGGHMRRH 214
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-8136159No hitNo description
PfamPF139121.8E-12136161IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471137164IPR007087Zinc finger, C2H2
SMARTSM003550.028137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-8187214No hitNo description
Gene3DG3DSA:3.30.160.604.6E-4190216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-11191216IPR007087Zinc finger, C2H2
SMARTSM003550.054192214IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951192216IPR007087Zinc finger, C2H2
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEAFEEAIAA SKEQSLIFKG KRTKRQRPQS PIPFSIISPP IVSSHAHDIQ EESKKDGVIT  60
SSSSSASWSS NNNATLKAEE DEEEQEIANC LILLSQGHSL PLPNHEANNN NTYRFSSRRF  120
LETSSSNGGD KAGYYVYQCK TCDRTFPSFQ ALGGHRASHK KPKATLSSYS NIDNNNNRSL  180
AVYGKAGSNK VHECGVCGAE FTSGQALGGH MRRHRGAVVI AAAPVTTVTV ATAAANTELS  240
LSSMSFDQIS DGQDHLVMPA TKRAKKTVVS LDLDLNLPAP EDENRVNGFT FALKQKQEQE  300
HQPTMQREEP KCLHMSAPTL VDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080902001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022569432.10.0zinc finger protein ZAT5-like
TrEMBLA0A078I4600.0A0A078I460_BRANA; BnaC09g50520D protein
STRINGBo9g180060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-139C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]