PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00080930001

Common Name

GSBRNA2T00080930001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 202aa MW: 22631.6 Da PI: 7.3464

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00080930001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.1	4.1e-12	12	50	1	39
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 k+ie k ++v fskRr+g++ K L+vL +a+va++ GSBRNA2T00080930001 12 KKIEKKESKSVAFSKRRKGLFSKTAQLCVLSGAQVAILA 50 689*********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.6E-8	1	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.895	4	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-13	10	80	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-12	13	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MGGLKRKIPT DKKIEKKESK SVAFSKRRKG LFSKTAQLCV LSGAQVAILA TPPCSKSNVS 60 FYSFGHSSVD SVVSAFLKNE YPREDHLGSE FWWEDKRLSE SEDPKELSEA VDSISRMMQN 120 LKGLRSKALA TREDAKKKRK EVFFDQSQTL NLQSAGASRN LYGCYQEFDI DQIFDFVEST 180 EDLSMNSEMD VASMIASLIE N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00080930001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009122928.1	1e-105	PREDICTED: agamous-like MADS-box protein AGL97
Refseq	XP_022548769.1	1e-104	agamous-like MADS-box protein AGL97
TrEMBL	A0A078I6W1	1e-146	A0A078I6W1_BRANA; BnaC09g50730D protein
STRING	Bra009436.1-P	1e-104	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04640.1	1e-64	AGAMOUS-like 99

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]