PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00080935001

Common Name

GSBRNA2T00080935001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 453aa MW: 50350.8 Da PI: 6.7247

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00080935001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.2e-13	69	113	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky GSBRNA2T00080935001 69 PWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 113 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.707	62	118	IPR017930	Myb domain
SuperFamily	SSF46689	6.21E-15	64	118	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-15	65	117	IPR006447	Myb domain, plants
SMART	SM00717	7.7E-11	66	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-9	68	112	IPR009057	Homeodomain-like
CDD	cd00167	2.32E-9	69	114	No hit	No description
Pfam	PF00249	1.0E-11	69	113	IPR001005	SANT/Myb domain
SuperFamily	SSF55021	5.29E-6	373	428	No hit	No description
CDD	cd04873	8.69E-8	374	439	No hit	No description
PROSITE profile	PS51671	9.002	375	452	IPR002912	ACT domain
Gene3D	G3DSA:3.30.70.260	1.6E-5	378	423	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0016597	Molecular Function	amino acid binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MASSQWTKII ADQLQKSAGE VREHYEALVH DVIEIESGRV HVPHYMDDSA VQISFESKHG 60 ENERKRGTPW SESEHKLFLV GLKRYGKGDW RSISRNVVVT RTPTQVASHA QKYFLRQNSG 120 KKERKRSSIH DITTVDTSLA MHGSNMDWNG QHDSPVQPQQ QQIMSEFDGS ASDELKASFP 180 QVSALGSMIV WTSFTPSSAT SCQTRFPALT SPPVLSHAFF ADLRVIPLST RSIRNRVYAS 240 INNIDVATPS HQDADPEATI VQLSFGDRLG ALIDTMRALK DFGLGVTKGT VSTEGSVKQT 300 KFSITKLDTG RKVEDPDSLE QIRLTIINNL LKYHPECSDQ LAMGESFGIK APQKKIDVDI 360 ATHIHVKEDG PKRSLLCIET ADRPGLVVEM IKVMADINID VESAEIDTEG LVAKDKFHVS 420 YQGQALNSSL SQVLVNCLRY FLRRPETDID SY*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MASSQWTKII ADQLQKSAGE VREHYEALVH DVIEIESGRV HVPHYMDDSA VQISFESKHG  60
ENERKRGTPW SESEHKLFLV GLKRYGKGDW RSISRNVVVT RTPTQVASHA QKYFLRQNSG  120
KKERKRSSIH DITTVDTSLA MHGSNMDWNG QHDSPVQPQQ QQIMSEFDGS ASDELKASFP  180
QVSALGSMIV WTSFTPSSAT SCQTRFPALT SPPVLSHAFF ADLRVIPLST RSIRNRVYAS  240
INNIDVATPS HQDADPEATI VQLSFGDRLG ALIDTMRALK DFGLGVTKGT VSTEGSVKQT  300
KFSITKLDTG RKVEDPDSLE QIRLTIINNL LKYHPECSDQ LAMGESFGIK APQKKIDVDI  360
ATHIHVKEDG PKRSLLCIET ADRPGLVVEM IKVMADINID VESAEIDTEG LVAKDKFHVS  420
YQGQALNSSL SQVLVNCLRY FLRRPETDID SY*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in feedback regulation of amino acid metabolism. {ECO:0000303\|PubMed:21861936}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00080935001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072401	0.0	AY072401.1 Arabidopsis thaliana putative protein (At5g04740) mRNA, complete cds.
GenBank	AY087362	0.0	AY087362.1 Arabidopsis thaliana clone 34592 mRNA, complete sequence.
GenBank	AY114702	0.0	AY114702.1 Arabidopsis thaliana putative protein (At5g04740) mRNA, complete cds.
GenBank	JF797177	0.0	JF797177.1 Arabidopsis thaliana ACT domain-containing protein (ACR12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009122573.1	1e-178	PREDICTED: ACT domain-containing protein ACR12-like
Refseq	XP_022549373.1	1e-178	ACT domain-containing protein ACR12
Swissprot	Q9LZ23	1e-150	ACR12_ARATH; ACT domain-containing protein ACR12
TrEMBL	A0A078I499	0.0	A0A078I499_BRANA; BnaC09g50770D protein
STRING	Bo9g178970.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7256	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	6e-86	MYB family protein

Publications ? help Back to Top
Peltier JB,Ytterberg AJ,Sun Q,van Wijk KJ New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. J. Biol. Chem., 2004. 279(47): p. 49367-83 [PMID:15322131] Rutschow H,Ytterberg AJ,Friso G,Nilsson R,van Wijk KJ Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Plant Physiol., 2008. 148(1): p. 156-75 [PMID:18633119] Sung TY,Chung TY,Hsu CP,Hsieh MH The ACR11 encodes a novel type of chloroplastic ACT domain repeat protein that is coordinately expressed with GLN2 in Arabidopsis. BMC Plant Biol., 2011. 11: p. 118 [PMID:21861936] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]