PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080953001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 245aa    MW: 27473.3 Da    PI: 5.9871
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080953001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.83.3e-921243111338
                 GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                          +vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv+     +ke l ++++rL + Ae+l++pf+fn+ v+++l++l++++Lrvk+gE
  GSBRNA2T00080953001   1 MVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHL----HKEVLDQMAHRLIEEAEKLDIPFQFNP-VVSSLDCLNVDQLRVKTGE 85 
                          79*************************************....9**************************.799**************** PP

                 GRAS 201 alaVnlvlqlhrll..................desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                          alaV++vlqlh++l                  ++s++l++  ++d++L+++++lsPk++vv+eq +dhn+++++er+le+l+ y+alfd+
  GSBRNA2T00080953001  86 ALAVSSVLQLHTFLasdsdmsnnnghslsgdsASSLPLSNsgKIDRFLNAIWGLSPKIMVVTEQHSDHNGSTLMERLLESLYSYAALFDC 175
                          ******************************99666666666699********************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                          le+k+pr+s++rikvE++l+g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++++ qa+
  GSBRNA2T00080953001 176 LENKIPRTSQDRIKVEKMLFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYYVMLQAR 243
                          ******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.9451244IPR005202Transcription factor GRAS
PfamPF035141.1E-891243IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVHVIDLDAS EPAQWLALIQ AFNSRPEGPP HLRITGVHLH KEVLDQMAHR LIEEAEKLDI  60
PFQFNPVVSS LDCLNVDQLR VKTGEALAVS SVLQLHTFLA SDSDMSNNNG HSLSGDSASS  120
LPLSNSGKID RFLNAIWGLS PKIMVVTEQH SDHNGSTLME RLLESLYSYA ALFDCLENKI  180
PRTSQDRIKV EKMLFGEEIK NIIACEGSER RERHEKLEKW SQRIDLAGFG NVPLSYYVML  240
QARR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-342242130342Protein SCARECROW
5b3h_A3e-342242129341Protein SCARECROW
5b3h_D3e-342242129341Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080953001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638736.11e-180PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 3
SwissprotQ9LPR81e-150SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0D3CG000.0A0A0D3CG00_BRAOL; Uncharacterized protein
STRINGBo5g078760.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-152scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]