PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080958001
Common NameGSBRNA2T00080958001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 298aa    MW: 34220.6 Da    PI: 6.6109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080958001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.2e-201664250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         +++++s + +++  R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
  GSBRNA2T00080958001 16 SSSSYSLAATSLKSRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 64
                         799*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.112567IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-132799IPR002100Transcription factor, MADS-box
PfamPF003192.6E-102963IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRPPRSSSCS KCSSASSSSY SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEL  60
RTWPENRDIV RSLALRYIQL DQAKRRKKSV NLYEFLNKNK DKKTMLNKFK KRNVEELKYP  120
ISDHYSPDQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSMNPSQFT PLPQELYVND  180
KNNTFQHLCV SDYSEVQESA LRYQLMPYGG YDQNMCMGNI NNVQHPWVSN AQPPELQEPN  240
QLMQHEPYGF DQNMCMGDTT NSCNVVDPCL PNMLPDDFCF DFQDPYGGNM ESTLPSL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00080958001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633155.10.0PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ9FLL03e-60AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078JN080.0A0A078JN08_BRANA; BnaCnng60900D protein
STRINGBo4g139640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40120.13e-60AGAMOUS-like 76
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]