PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00081187001
Common NameGSBRNA2T00081187001, LOC106379525
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 354aa    MW: 40826.4 Da    PI: 7.4305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00081187001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-1694139147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
  GSBRNA2T00081187001  94 RGHWRPAEDVKLKELVAIYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 139
                          899*****************************.***********996 PP
2Myb_DNA-binding57.23.7e-18146189146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++T++E+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ 
  GSBRNA2T00081187001 146 RRAFTEDEEERLMQAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHV 189
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.75489140IPR017930Myb domain
SMARTSM007173.9E-1493142IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2894187IPR009057Homeodomain-like
PfamPF002496.3E-1694139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2595147IPR009057Homeodomain-like
CDDcd001673.42E-1297138No hitNo description
PROSITE profilePS5129427.162141195IPR017930Myb domain
SMARTSM007171.6E-14145193IPR001005SANT/Myb domain
PfamPF002494.8E-15146188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-21148194IPR009057Homeodomain-like
CDDcd001675.71E-11148188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MFILEKQWRT DEVAAARREA SPWDFPFNDI NVQHHRRCNT SHEFDILKSP VGDNVEGSNN  60
HNPNYSNNES GKKETTNSGQ SWSSSSSKPS VLGRGHWRPA EDVKLKELVA IYGPQNWNLI  120
AEKLQGRSGK SCRLRWFNQL DPRINRRAFT EDEEERLMQA HRLYGNKWAM IARLFPGRTD  180
NSVKNHWHVI MARKYREHSS AYRRRKLMIN NPLKPHLSNH PSPNPNHHSF ISTHHYFTQP  240
FHEFNLTHHL VNNASITPDH NQLVLPFHCF QGYESNETPM VVSMFGNQIM GGDNVGVMSE  300
GLYDYPYIDS TSHEKGVPNE PRSWIGMEGE DEEVVETAKQ QPHFFDFLGL GTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-31921942104MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-31911941104C-Myb DNA-Binding Domain
1msf_C6e-31911941104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00081187001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3348160.0AF334816.1 Arabidopsis thaliana putative transcription factor (MYB117) mRNA, complete cds.
GenBankAY5195590.0AY519559.1 Arabidopsis thaliana MYB transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ4462910.0DQ446291.1 Arabidopsis thaliana clone pENTR221-At1g26780 myb family transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ6528620.0DQ652862.1 Arabidopsis thaliana clone 0000017266_0000012084 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603558.10.0PREDICTED: transcriptional activator Myb-like
RefseqXP_013674909.10.0transcription factor MYB117
RefseqXP_022545979.10.0transcription factor MYB117
SwissprotQ9LQX50.0MY117_ARATH; Transcription factor MYB117
TrEMBLA0A078I7790.0A0A078I779_BRANA; BnaCnng12230D protein
TrEMBLA0A0D3DR950.0A0A0D3DR95_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GCF20.0A0A3P6GCF2_BRAOL; Uncharacterized protein
STRINGBo8g076540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.20.0myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]