PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00081323001
Common NameGSBRNA2T00081323001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 305aa    MW: 34305.3 Da    PI: 6.2428
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00081323001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.91.1e-125130187374
                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          ++Pilk+s+l++N+aIlea+ege++vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke l ++++rL + Ae+l++pf
  GSBRNA2T00081323001   1 MFPILKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLDQMAHRLIEEAEKLDIPF 86 
                          79*************************************************************....9********************** PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................desvsles..erdevLklvkslsPkvvvvveqeadh 248
                          +fn+ v+++l++l++e+Lrvk+gEalaV++vlqlh+ll                ++s++l++  ++d++L+++++lsPk++vv+eq++dh
  GSBRNA2T00081323001  87 QFNP-VVSSLQCLNVEQLRVKTGEALAVSSVLQLHNLLasdvtsnnghslsgdsASSLPLSNsgKIDSFLNAIWGLSPKIMVVTEQDSDH 175
                          ****.799********************************************9966666665569999********************** PP

                 GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                          n+++ +er+le+l++y+alfd+le+k+pr+s++r+kvE++l+g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ qa+
  GSBRNA2T00081323001 176 NGSTVMERLLESLYTYAALFDCLETKVPRTSQDRMKVEKMLFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQAR 265
                          ****************************************************************************************** PP

                 GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          +ll+ +++dgyr++eesg++v++W+drpL+svSaWr
  GSBRNA2T00081323001 266 RLLQGYGFDGYRIKEESGCAVICWQDRPLYSVSAWR 301
                          ***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.9E-1231301IPR005202Transcription factor GRAS
PROSITE profilePS5098550.1971281IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MFPILKVSYL LTNRAILEAM EGEKMVHVID LDASEPAQWL ALIQAFNSRP EGPPHLRITG  60
VHHQKEVLDQ MAHRLIEEAE KLDIPFQFNP VVSSLQCLNV EQLRVKTGEA LAVSSVLQLH  120
NLLASDVTSN NGHSLSGDSA SSLPLSNSGK IDSFLNAIWG LSPKIMVVTE QDSDHNGSTV  180
MERLLESLYT YAALFDCLET KVPRTSQDRM KVEKMLFGEE IKNIIACEGS ERRERHEKLE  240
KWSQRIDLAG FGNVPLSYYA MLQARRLLQG YGFDGYRIKE ESGCAVICWQ DRPLYSVSAW  300
RCRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-533303107381Protein SCARECROW
5b3h_A8e-533303106380Protein SCARECROW
5b3h_D8e-533303106380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00081323001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735826.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A078I6N50.0A0A078I6N5_BRANA; BnaA08g02160D protein
TrEMBLA0A397YC940.0A0A397YC94_BRACM; Uncharacterized protein
TrEMBLM4DCN50.0M4DCN5_BRARP; Uncharacterized protein
STRINGBra014251.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]