PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00081659001

Common Name

GSBRNA2T00081659001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 410aa MW: 44279.4 Da PI: 9.8282

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00081659001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.5e-06	361	385	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+ff r+ Ck G++C + H+p GSBRNA2T00081659001 361 QKPCMFFGRGRGCKLGESCLYLHDP 385 579********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.807	359	386	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MGSNVKKARV SWPSDSMLCQ VKMFKTEDYP AKVGAQTCSK SKASKDLQRG TVPPNIPLIK 60 WKLPPKFILS NHLLVASGED STETGSENLR IAKVLEGFYP HRSLIHSRPF ISPAAVQVDD 120 TNTPTIRVTP IEDDDEQPAL QSSIASPSFF GLGPDLSLTA LAALLNTKEQ GSLVNADLLV 180 KFLTDPTIIN NLLNAAAKPL ETGNNNNTTK PPPQHVTTSS ANSPPGNGVT PFLAAAQSIV 240 SHVPTQPMAP LVLNTYPSSC AVKPLPRVEK SLETSSVVVS EPQCRSGTWN MSRVEESAGT 300 GTDAQSAYAM NITRDDYFKN LIREHGGVVA PATNNNKRRF DNNNNNNDDK KKALAVKVKS 360 QKPCMFFGRG RGCKLGESCL YLHDPSKRLS TYDVAAAAAP RAKRLKFRT*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MGSNVKKARV SWPSDSMLCQ VKMFKTEDYP AKVGAQTCSK SKASKDLQRG TVPPNIPLIK  60
WKLPPKFILS NHLLVASGED STETGSENLR IAKVLEGFYP HRSLIHSRPF ISPAAVQVDD  120
TNTPTIRVTP IEDDDEQPAL QSSIASPSFF GLGPDLSLTA LAALLNTKEQ GSLVNADLLV  180
KFLTDPTIIN NLLNAAAKPL ETGNNNNTTK PPPQHVTTSS ANSPPGNGVT PFLAAAQSIV  240
SHVPTQPMAP LVLNTYPSSC AVKPLPRVEK SLETSSVVVS EPQCRSGTWN MSRVEESAGT  300
GTDAQSAYAM NITRDDYFKN LIREHGGVVA PATNNNKRRF DNNNNNNDDK KKALAVKVKS  360
QKPCMFFGRG RGCKLGESCL YLHDPSKRLS TYDVAAAAAP RAKRLKFRT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00081659001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022545113.1	0.0	zinc finger CCCH domain-containing protein 68-like
Swissprot	Q9FH61	1e-91	C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBL	A0A078I2Y0	0.0	A0A078I2Y0_BRANA; BnaA07g12650D protein
TrEMBL	A0A3P6BRH0	0.0	A0A3P6BRH0_BRACM; Uncharacterized protein
STRING	Bo7g064980.1	1e-171	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]