PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00081759001

Common Name

GSBRNA2T00081759001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 299aa MW: 33906.9 Da PI: 5.6585

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00081759001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.4	1.9e-11	2	42	53	95
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++k+++++++kGW +Fv +n L++gDf++F ++g + fe + GSBRNA2T00081759001 2 KRKRDEVYFGKGWTKFVTDNSLNDGDFLTFVYNGANVFEV--S 42 688899**************************99888844..3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.914	1	47	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-8	2	40	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.7E-11	2	46	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.11E-9	4	44	No hit	No description
SuperFamily	SSF101936	4.71E-11	4	49	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.84E-7	197	282	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.7E-6	200	284	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MKRKRDEVYF GKGWTKFVTD NSLNDGDFLT FVYNGANVFE VSIYGLGGCK EMRAVTEVEE 60 VKEDSVVSLS STDSDTSSES VVANTISKNK GQSQVVEDED ESEEAEAETC SESTVAKTTT 120 GSRNKGKKKE KVVESSNEDS DSDYTEANED SDSDDTEVSG DLYAFSESSN TVAQPKKKRE 180 RVTIKKIKDP EKYLVDPKNV FFETNVKNRP YELLVSAQLV KDYDLKFKKL VYYTDYHKDG 240 KLQAKTTKWK DNRVCIKKWN RICKRNKLKK GDGILCELKR KEGFVYAVII HIVREKDL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00081759001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138291.1	0.0	PREDICTED: B3 domain-containing protein At4g34400-like
Swissprot	Q9SZ05	4e-76	Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBL	A0A078I5F2	0.0	A0A078I5F2_BRANA; BnaA03g52800D protein
STRING	Bra017651.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6555	16	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34400.1	8e-46	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Richter R, et al. Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications. PLoS Genet., 2019. 15(4): p. e1008065 [PMID:30946745]