PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00081916001
Common NameGSBRNA2T00081916001, LOC106357317
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 197aa    MW: 21987.3 Da    PI: 4.2089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00081916001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-192171155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+ykGVr +k +g+Wv+eIr p++   r r++lg+f+t+e+Aa+a +aa  +l+g
  GSBRNA2T00081916001 21 SKYKGVRKRK-WGKWVSEIRLPNS---RDRIWLGSFDTPEKAARAFDAAQFCLRG 71
                         89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-122171IPR001471AP2/ERF domain
CDDcd000188.76E-302181No hitNo description
SuperFamilySSF541711.9E-202180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-282280IPR001471AP2/ERF domain
SMARTSM003804.6E-302285IPR001471AP2/ERF domain
PROSITE profilePS5103222.0232279IPR001471AP2/ERF domain
PRINTSPR003677.5E-102334IPR001471AP2/ERF domain
PRINTSPR003677.5E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVKKAMKEEE EAEMRNSSMQ SKYKGVRKRK WGKWVSEIRL PNSRDRIWLG SFDTPEKAAR  60
AFDAAQFCLR GRQSGFNFPD NPPSISGGRS LTPPEIREAA ARYANAQDGD IIISTGEEES  120
VLSETRPESP STSVSEAAMS LDCDLSFLDT LPNDFGMFSG FDDFSDGFSG DQFTEVLPVE  180
DYGDVIFDES LFLWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1520871280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.231831e-119seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00081916001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652451.11e-142ethylene-responsive transcription factor ERF018
SwissprotQ9S7L54e-88ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A078I6641e-141A0A078I664_BRANA; BnaA07g31860D protein
STRINGBra015882.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.18e-78ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]