PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00082025001

Common Name

GSBRNA2T00082025001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 177aa MW: 20741.7 Da PI: 10.3172

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00082025001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	46	1.1e-14	60	109	5	55
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 Wt+e H +F++a++ L G e Pk+il +m+v++Lt +v+ HL Y+ GSBRNA2T00082025001 60 LWTCENHLKFLSAISYL-GDEDSHPKSILSIMNVPSLTHREVARHLESYKA 109 5**************.9999************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.2E-10	54	113	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-13	59	114	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-12	60	110	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MLQHVLPNKS QKLEKLSIPN NAEDVSEVRI NQMKAFRENL RRQRTEVNNI ESKVRRRSNL 60 WTCENHLKFL SAISYLGDED SHPKSILSIM NVPSLTHREV ARHLESYKAK VDRMNETLSR 120 KEWIPTNKTF EYPSDYKYPF TLSNIAKQKN SGKNLIRERD TKLKFYLGGQ MDLSFI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00082025001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189489	2e-95	AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022559893.1	1e-129	putative two-component response regulator-like APRR6 isoform X1
Swissprot	Q9C9F6	1e-38	APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBL	A0A078JNA8	1e-127	A0A078JNA8_BRANA; BnaCnng61430D protein
TrEMBL	A0A0D3CYY0	1e-127	A0A0D3CYY0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6H5P5	1e-126	A0A3P6H5P5_BRAOL; Uncharacterized protein
STRING	Bo6g106810.1	1e-128	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13685	14	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	5e-41	pseudo-response regulator 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]