PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082090001
Common NameGSBRNA2T00082090001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 464aa    MW: 51019.6 Da    PI: 9.1914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082090001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05130153123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ++C+ Cg+ F+   +L++Hi   H
  GSBRNA2T00082090001 130 FPCTTCGEIFPKTTLLEHHIAIkH 153
                          89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.265130158IPR007087Zinc finger, C2H2
PROSITE patternPS000280132153IPR007087Zinc finger, C2H2
SuperFamilySSF563991.34E-11155377No hitNo description
Gene3DG3DSA:3.90.228.106.6E-10157376IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAARKLGSLL RQHFFSLFFL FVGCFFFPKG GDLRQKRRKK KKLRTVTSGS GLSSSWTYLK  60
RVFLSTTRIS KSRNQTHPNG PLTTLTSARS SQNSLVTLVQ PDPETRTENG FSDISSSDSP  120
PFLPLRSEIF PCTTCGEIFP KTTLLEHHIA IKHAVSELVD GESSTNIVKI IFKSGWPEQG  180
DNKKIPEIHR ILKIHNSPKI LARFEEYREF VKAKAARGSG NGRWDDERCV VDGNELLRFY  240
CSTFMCSLGQ NGSSGLCGHQ YCSICGIIGS GFSPKLDGIA TFATGWRGHV AVPEEVEEEF  300
GFMNVKRAML VCRVVAGRVG CDLIADDDVD KSGGGYDSLV GQGSGSKSGA LLRIDDEELL  360
VFNPRAVLPC FVIVYTVFGS EVIVNRMKLQ RLLGSRKGGA SKPSSSGPVT AFTQARLLGD  420
LCIFFGKSET FCLKASKYDV SWSPQLILYI TLSTALEFTI SQPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541KRRKKKK
23642RRKKKKL
33743RKKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082090001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325770.0AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660929.10.0uncharacterized protein LOC106365952
RefseqXP_013748904.10.0uncharacterized protein LOC106451519
RefseqXP_022575432.10.0uncharacterized protein LOC111215708
TrEMBLA0A078I7S80.0A0A078I7S8_BRANA; BnaA05g12370D protein (Fragment)
TrEMBLA0A3P5YSP20.0A0A3P5YSP2_BRACM; Uncharacterized protein
STRINGBra018369.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-168C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]