PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082314001
Common NameGSBRNA2T00082314001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 239aa    MW: 27402.2 Da    PI: 8.3641
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082314001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.1e-128663397
                         -SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 33 sktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         + t +l++  s  +W+v++  + ++ r  lt+GWkeF+ a++L++gD+v+F+ +++++f  +v+++
  GSBRNA2T00082314001  8 KNTAKLRSeASEMTWKVNI--EDGR-R--LTEGWKEFALAHDLRVGDIVIFRQERDMSF--HVTLL 66
                         3478888845669******..4444.3..9**********************8777888..77765 PP
2B361.21.7e-19143238198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ +++++ +k++rl+lp  f++++g++ e  ++l l d++g +W+  l+ + +++r+ + +GWk+F kan Lk g+ ++Fkl+++ ++
  GSBRNA2T00082314001 143 FVTLTVKPSDFKNSRLYLPMAFTKDNGINAE--TKLALLDKNGVKWSTDLRSEYNGKRIRMIGGWKKFFKANFLKIGEPIMFKLIWDGNT 230
                          7788899*******************99954..58***************9999999999999************************999 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                          ++v+k+++
  GSBRNA2T00082314001 231 SCVLKLCS 238
                          99999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0013169IPR003340B3 DNA binding domain
PROSITE profilePS5086312.323169IPR003340B3 DNA binding domain
CDDcd100171.04E-9366No hitNo description
Gene3DG3DSA:2.40.330.104.8E-21781IPR015300DNA-binding pseudobarrel domain
PfamPF023625.0E-8963IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-141976IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-18142234IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.3E-19143238IPR003340B3 DNA binding domain
CDDcd100171.26E-15143234No hitNo description
PfamPF023622.4E-19143238IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-19143232IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.016143238IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEGRNDHKNT AKLRSEASEM TWKVNIEDGR RLTEGWKEFA LAHDLRVGDI VIFRQERDMS  60
FHVTLLGPSC CEIQYGSCID QDNNLGQFFI QKKNPKREEA ESSCFVANVT PSNLRYDRLE  120
SDEDSNHISS QERIEREDKK GGFVTLTVKP SDFKNSRLYL PMAFTKDNGI NAETKLALLD  180
KNGVKWSTDL RSEYNGKRIR MIGGWKKFFK ANFLKIGEPI MFKLIWDGNT SCVLKLCS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.191402e-90seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082314001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573891.11e-168B3 domain-containing protein REM14-like
TrEMBLA0A078I8X71e-177A0A078I8X7_BRANA; BnaA04g14550D protein
STRINGBra032079.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2146535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.13e-59B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]