PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082368001
Common NameGSBRNA2T00082368001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 369aa    MW: 41502.3 Da    PI: 5.622
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082368001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.8e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+d+++  G+g +W + ++++g++R++k+c++rw++yl
  GSBRNA2T00082368001 14 KGPWSPEEDAKLKDYIENNGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding38.52.7e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +++eEd ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  GSBRNA2T00082368001  69 GGFSEEEDNIICNLYVTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.829962IPR017930Myb domain
SuperFamilySSF466897.19E-2611109IPR009057Homeodomain-like
SMARTSM007174.4E-111364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-241569IPR009057Homeodomain-like
CDDcd001677.59E-81662No hitNo description
PROSITE profilePS5129421.38563117IPR017930Myb domain
SMARTSM007172.2E-1167115IPR001005SANT/Myb domain
PfamPF002496.4E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2370117IPR009057Homeodomain-like
CDDcd001674.80E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NNGTGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLNK  120
QRKEYQEARM KQDMVMIKRQ EQGQGQSNAS KDLYLNNMFG SSPWPLLPQL PSPHHQVPLV  180
MMEPTSCNYY QMTPSCNFEQ KSLITLKNMV KTEEEPERTN PDHHHPEDSI TNPFDFSFSQ  240
LLLDPNYYLE SVGGEGELAI TSSSTNSPLP NTSADHHQQQ QEILQWFGSS NFQTEAVNDM  300
FLNNNDIANL ETNENTKFYG NLPVAGAAAA LAGGTTSTSA DQSTISWEDI TSLVNSDDAS  360
YFNGPNHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082368001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2274720.0AK227472.1 Arabidopsis thaliana mRNA for transcription factor like protein, complete cds, clone: RAFL14-10-M08.
GenBankAY5196470.0AY519647.1 Arabidopsis thaliana MYB transcription factor (At5g65790) mRNA, complete cds.
GenBankBT0059940.0BT005994.1 Arabidopsis thaliana At5g65790 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626384.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y91e-123RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A078I8A00.0A0A078I8A0_BRANA; BnaCnng13370D protein
STRINGBo3g097710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-179myb domain protein 68
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]