PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082449001
Common NameGSBRNA2T00082449001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 490aa    MW: 54434.7 Da    PI: 5.8854
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082449001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.51.4e-971144821373
                 GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfse 86 
                          lv+lL+++A+a    d++  l++ lLa+l+++ s ++ ++m+Rlaa+ft++L++   +   ++ ++  p ++ + ++ ++++ a++++++
  GSBRNA2T00082449001 114 LVHLLVAAADASIGADKTreLTRVLLAKLKDMTSTNDrTNMERLAAHFTNGLSKLHKE--ANVQRQYgPHQHPDVHDRVDVMLAFQMLQN 201
                          689******997554433349***********6666659*************987777..666666625555555669999********* PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeel 172
                          +sP+++f++lta qaIleav+ e+r+Hi+D+di+ G+QWp+L+qaL sR+ gp   +lRiT+++++++g  s  +++e g+rL+ fAe++
  GSBRNA2T00082449001 202 MSPYINFGYLTATQAILEAVQYERRIHIVDYDITDGVQWPSLMQALVSRNTGPSaqHLRITALSRATNGkkSVAAVQEAGRRLTAFAESI 291
                          **************************************************765446*********999999999**************** PP

                 GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfleal 261
                          g pf+++     + +++++++L++ +gEa+++n+vl+l r+ +++ ++     ++L+  k+l+Pk+v++v++e+ + +++ Fl rf++ l
  GSBRNA2T00082449001 292 GQPFSYHH-CRMESDTFNPSSLKLVRGEAVVINCVLHLPRFSHQPPNSII---SFLSEAKTLNPKLVTLVHEEVGLvGNQGFLYRFMDLL 377
                          *******9.7889*****************************98888887...9**********************9************* PP

                 GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                          + +sa+fdslea+      +r +vEr+++g++++ +++       ++ e++++W  +l + GFkpv++s  + +qaklll+ ++ dgy v
  GSBRNA2T00082449001 378 HQFSAIFDSLEAG-----PARGFVERVIFGPWVSGWLTRIAIT--AEVESFASWPLWLATNGFKPVEVSFANRCQAKLLLSLFN-DGYGV 459
                          *************.....9*******************99997..99*************************************.***** PP

                 GRAS 352 eee.sgslvlgWkdrpLvsvSaW 373
                          ee  ++ lvlgWk+r+Lvs+S+W
  GSBRNA2T00082449001 460 EELgQNGLVLGWKSRRLVSASFW 482
                          *98789999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.24888463IPR005202Transcription factor GRAS
PfamPF035144.8E-95114482IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.808.1E-4190227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MHFPFFFITS MTMNPPYDDF PNLLFSNNTA TATSTSSCVE QHDGIISLDM DWDCDFHDLI  60
ESMMSDKGAT TESPPMLPCY HGQEGILNSS STGLSMADEL DHDVEADESK GLRLVHLLVA  120
AADASIGADK TRELTRVLLA KLKDMTSTND RTNMERLAAH FTNGLSKLHK EANVQRQYGP  180
HQHPDVHDRV DVMLAFQMLQ NMSPYINFGY LTATQAILEA VQYERRIHIV DYDITDGVQW  240
PSLMQALVSR NTGPSAQHLR ITALSRATNG KKSVAAVQEA GRRLTAFAES IGQPFSYHHC  300
RMESDTFNPS SLKLVRGEAV VINCVLHLPR FSHQPPNSII SFLSEAKTLN PKLVTLVHEE  360
VGLVGNQGFL YRFMDLLHQF SAIFDSLEAG PARGFVERVI FGPWVSGWLT RIAITAEVES  420
FASWPLWLAT NGFKPVEVSF ANRCQAKLLL SLFNDGYGVE ELGQNGLVLG WKSRRLVSAS  480
FWASCESSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4012548228377Protein SCARECROW
5b3h_D3e-4012548228377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082449001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2425570.0JX242557.1 Brassica montana isolate BmNSP2 nodulation signaling pathway 2-like protein gene, complete cds.
GenBankJX2425590.0JX242559.1 Brassica carinata isolate BcaNSP2_C nodulation signaling pathway 2-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666923.10.0scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLA0A078I6E30.0A0A078I6E3_BRANA; BnaC09g32140D protein
STRINGBra002894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]