PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00082683001

Common Name

GSBRNA2T00082683001, LOC106439888

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 243aa MW: 26073.1 Da PI: 10.1055

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00082683001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.5	6.6e-40	32	206	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a++ ss++ + s++ GSBRNA2T00082683001 32 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTAVRGSSTTISTSANctl 121 789****************************************************************999777777777766666788 PP TCP 89 ....................................................kaaksaakskksqksaasalnlakesrakarar 121 +++ + ++++++q+++a+al ++++++++a + GSBRNA2T00082683001 122 sspldhkpfilgkrlredsgggkeemgsfatpagfwavparpdfgqvwsfasHQEMFLQQQQQQQQQPAAALFVHQQQQQQAAMG 206 888999999999999999999**************************997666666677778888887787777776666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	38	92	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.1E-33	38	197	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSNNNNDGVM ISNGSLIEHQ QNQKQSSDGA LAVKKPPAKD RHSKVDGRGR RIRMPIICAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTAVRGSS TTISTSANCT 120 LSSPLDHKPF ILGKRLREDS GGGKEEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ 180 QQQQQQQQPA AALFVHQQQQ QQAAMGEASA ARVGNYLPGH LNLLASLSGG APGSGRREDD 240 QR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13957	3e-74	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00082683001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013736882.1	1e-179	transcription factor TCP7
Swissprot	Q9FMX2	1e-103	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A078I4H3	1e-178	A0A078I4H3_BRANA; BnaC02g42220D protein
STRING	Bo7g097790.1	1e-163	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-63	TCP family protein

Link Out ? help Back to Top
Entrez Gene	106439888

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]