PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082715001
Common NameGSBRNA2T00082715001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 235aa    MW: 26670.5 Da    PI: 6.1212
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082715001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.45.1e-151592032468
             trihelix  24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                          + ++k +W+ v +++ erg+++sp+qC++k+++lnkr+kk+++++
  GSBRNA2T00082715001 159 ALQRKSKWKFVFEVLFERGYHVSPQQCEDKFNDLNKRFKKLNDNR 203
                          4599*************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-11159203No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVSIYIKICL PPPAFRDWDL WGPLDSAGSV LRQGFCVSGN PERLRSTADS FVQSLEGERD  60
ENSPQEGMVC GGALSYGSFD LQGSMRVHHH NPNSRPLESL SFTVVTAQTC NHNMPLTEQH  120
KGERENNSVS YDHEPSFSEE GGDGDDLSMD GGSRRKFAAL QRKSKWKFVF EVLFERGYHV  180
SPQQCEDKFN DLNKRFKKLN DNRLNLHHDL ALQHSVKLAF RNIDDQENDD FRNH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082715001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013658809.11e-121uncharacterized protein LOC106363644
TrEMBLA0A078I7D11e-175A0A078I7D1_BRANA; BnaC04g22720D protein
STRINGBo5g023990.11e-134(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-44sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]