PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00082740001

Common Name

GSBRNA2T00082740001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 294aa MW: 32273 Da PI: 8.2202

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00082740001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	2e-09	153	200	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L+ l+P + +k Ka +L + ++Y++sLq GSBRNA2T00082740001 153 SHSLAERARREKISERMRTLQNLVPGC----DKVTGKALMLDEIINYVQSLQ 200 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.42E-10	147	204	No hit	No description
SuperFamily	SSF47459	4.97E-17	147	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.707	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-17	149	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-7	153	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-10	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MASFSYFQHY PHSLLDPLLF SSPNSSTKLS GFIDQNPLYP PPNISTIVDT SLNPFLDSFN 60 VEKTESSDVK KHINTNATAA LTSDQLSPGP SAGKKQRRKT RNGSKSKEGV EGRKSKKPRN 120 GSSSDVKEKR ANEQEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMR TLQNLVPGCD 180 KVTGKALMLD EIINYVQSLQ NQVEFLSMKL ASISPVVYDF GSDLDGIIVR PEIGSADVGT 240 SFANAMPTTT TNFSSLLDDS IIPAEAHLQE DGGEREKIVD RSGFNNNSFC SFS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28291	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00082740001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013682849.1	0.0	transcription factor bHLH137-like
Swissprot	Q93W88	1e-143	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A078I7F0	0.0	A0A078I7F0_BRANA; BnaC03g16290D protein
TrEMBL	A0A3N6UQI6	0.0	A0A3N6UQI6_BRACR; Uncharacterized protein
TrEMBL	A0A3P6ASP9	0.0	A0A3P6ASP9_BRAOL; Uncharacterized protein
STRING	Bo3g024010.1	0.0	(Brassica oleracea)
STRING	Bo3g024020.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-138	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]