PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00082955001

Common Name

GSBRNA2T00082955001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 441aa MW: 49920.9 Da PI: 9.8975

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00082955001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.5	1.8e-28	55	139	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ k+plWeevs+km e g+ r++k+Ckek+en+ k++k++keg+ ++++++ t+++fdqlea GSBRNA2T00082955001 55 RWPRQETLALLKIRSDMGIAFRDATVKGPLWEEVSRKMGELGYIRNAKKCKEKFENVYKYHKRTKEGRTEKSEGK--TYRFFDQLEA 139 8******************************************************************975544..6*****85 PP
2	trihelix	75.8	7.2e-24	368	433	1	66
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 rW+k e+ aLi++r++++++++++ k+plWe++s+ mr+ gf+r++k+Ckekwen+nk+ykk + GSBRNA2T00082955001 368 RWPKVEIEALIKLRTNLDSKYEENGPKGPLWEDISAGMRRLGFNRNSKRCKEKWENINKYYKKRGT 433 8*************************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.038	52	114	IPR001005	SANT/Myb domain
CDD	cd12203	2.14E-21	54	119	No hit	No description
PROSITE profile	PS50090	6.957	54	112	IPR017877	Myb-like domain
Pfam	PF13837	2.8E-17	54	140	No hit	No description
PROSITE profile	PS50090	7.05	361	425	IPR017877	Myb-like domain
SMART	SM00717	0.0044	365	427	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-4	365	424	IPR009057	Homeodomain-like
CDD	cd12203	2.77E-24	367	430	No hit	No description
Pfam	PF13837	4.0E-15	367	431	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MMQQGDSTTT SAATEAVPLQ HNESAATEAA AATSAAVGAF EVSEEMSDRG FGGNRWPRQE 60 TLALLKIRSD MGIAFRDATV KGPLWEEVSR KMGELGYIRN AKKCKEKFEN VYKYHKRTKE 120 GRTEKSEGKT YRFFDQLEAL ETHSTSSSHH HQPQSQPHNN SSMFSTPPPV TTVIPPTTNI 180 TPSFPNISGD FLSDNSTSSS YSTSSDVEVG DTKTTTTRRK KRKRKWKEFF ERLMKQVVGK 240 QEELQRKFLE TVEKREHERM VREESWRVQE IARINREHEI LAQERSMSAA KDAAVTAFLQ 300 KFSEKPNPQC QSIAQPQMEV IHNNQQATQQ QTPPPRPPQP LSALDTMKTD NGDQNMTPVS 360 AGALSSSRWP KVEIEALIKL RTNLDSKYEE NGPKGPLWED ISAGMRRLGF NRNSKRCKEK 420 WENINKYYKK RGTNSTPTTT *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MMQQGDSTTT SAATEAVPLQ HNESAATEAA AATSAAVGAF EVSEEMSDRG FGGNRWPRQE  60
TLALLKIRSD MGIAFRDATV KGPLWEEVSR KMGELGYIRN AKKCKEKFEN VYKYHKRTKE  120
GRTEKSEGKT YRFFDQLEAL ETHSTSSSHH HQPQSQPHNN SSMFSTPPPV TTVIPPTTNI  180
TPSFPNISGD FLSDNSTSSS YSTSSDVEVG DTKTTTTRRK KRKRKWKEFF ERLMKQVVGK  240
QEELQRKFLE TVEKREHERM VREESWRVQE IARINREHEI LAQERSMSAA KDAAVTAFLQ  300
KFSEKPNPQC QSIAQPQMEV IHNNQQATQQ QTPPPRPPQP LSALDTMKTD NGDQNMTPVS  360
AGALSSSRWP KVEIEALIKL RTNLDSKYEE NGPKGPLWED ISAGMRRLGF NRNSKRCKEK  420
WENINKYYKK RGTNSTPTTT *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	223	RKKRKR
2	218	224	RKKRKRK
3	219	224	KKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00082955001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189203	1e-105	AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013693759.1	0.0	trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-122	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A078I501	0.0	A0A078I501_BRANA; BnaA02g17810D protein
STRING	Bra008285.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4849	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-164	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]