PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00082958001

Common Name

GSBRNA2T00082958001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 489aa MW: 56432.7 Da PI: 7.1654

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00082958001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.8	7.9e-30	26	109	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ e+laL+++r+em++++r++ lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++ t+++f++l+ GSBRNA2T00082958001 26 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEVSRKMKELGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELQ 109 8******************************************************************975544..6****98 PP
2	trihelix	106	2.6e-33	329	414	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r+++e +++++ ++plWee+s mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea GSBRNA2T00082958001 329 RWPKTEVEALIRIRKNLEANYQENGTRGPLWEEISGGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFNQLEA 414 8*******************************************************************8.9**********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0098	23	85	IPR001005	SANT/Myb domain
CDD	cd12203	1.74E-24	25	90	No hit	No description
PROSITE profile	PS50090	6.864	25	83	IPR017877	Myb-like domain
Pfam	PF13837	2.0E-20	25	111	No hit	No description
SMART	SM00717	0.011	326	388	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.387	328	386	IPR017877	Myb-like domain
Pfam	PF13837	9.2E-24	328	415	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.0E-4	328	385	IPR009057	Homeodomain-like
CDD	cd12203	1.01E-24	329	393	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MGGSGEDEKD MKMEEIGEVG GGGGNRWPRP ETLALLRIRS EMDKAFRDST LKAPLWEEVS 60 RKMKELGYKR SAKKCKEKFE NVYKYHKRTK EGRTGKSEGK TYRFFEELQA LEALNSYPPE 120 PGSQPLKSST ATTTQPSPTT PFPIYSNNHA TTIDTGFSPT SNDLINNVSS LNLFSSSTSS 180 STASDEEEDH HHQDNRSRKK RKYWKGLFTK LTNELMEKQE KVQKRFLETF ENQERERISR 240 EEAWRVQEVA RINREHETLV HERSNAVAKD AVIISFLHKI SGGQQQQQQK HEVPQRKQYH 300 SEHSITFESK EPRPVLFDSN HSLSPSSSRW PKTEVEALIR IRKNLEANYQ ENGTRGPLWE 360 EISGGMRRLG YNRSAKRCKE KWENINKYFK KVKESNKKRP LDSKTCPYFN QLEALYNERN 420 KSGALSILPL MLTPQLLPQE TQTEVKTDQG DKAEEGESEE DDYENEYEEG DNETSEFEIL 480 LNKSSPMD*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MGGSGEDEKD MKMEEIGEVG GGGGNRWPRP ETLALLRIRS EMDKAFRDST LKAPLWEEVS  60
RKMKELGYKR SAKKCKEKFE NVYKYHKRTK EGRTGKSEGK TYRFFEELQA LEALNSYPPE  120
PGSQPLKSST ATTTQPSPTT PFPIYSNNHA TTIDTGFSPT SNDLINNVSS LNLFSSSTSS  180
STASDEEEDH HHQDNRSRKK RKYWKGLFTK LTNELMEKQE KVQKRFLETF ENQERERISR  240
EEAWRVQEVA RINREHETLV HERSNAVAKD AVIISFLHKI SGGQQQQQQK HEVPQRKQYH  300
SEHSITFESK EPRPVLFDSN HSLSPSSSRW PKTEVEALIR IRKNLEANYQ ENGTRGPLWE  360
EISGGMRRLG YNRSAKRCKE KWENINKYFK KVKESNKKRP LDSKTCPYFN QLEALYNERN  420
KSGALSILPL MLTPQLLPQE TQTEVKTDQG DKAEEGESEE DDYENEYEEG DNETSEFEIL  480
LNKSSPMD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	76	KRSAKKCKE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00082958001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079283	1e-132	AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence.
GenBank	AK227778	1e-132	AK227778.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-35-A17.
GenBank	AY087117	1e-132	AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.
GenBank	BT030363	1e-132	BT030363.1 Arabidopsis thaliana At1g76890 mRNA, complete cds.
GenBank	CP002684	1e-132	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	DQ108831	1e-132	DQ108831.1 Arabidopsis thaliana clone 27806 mRNA sequence.
GenBank	X72780	1e-132	X72780.1 A.thaliana mRNA for GT-2 factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128204.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	0.0	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A078I769	0.0	A0A078I769_BRANA; BnaA02g17830D protein
STRING	Bra008286.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5995	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	0.0	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]