PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083085001
Common NameGSBRNA2T00083085001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 854aa    MW: 93803.9 Da    PI: 8.0398
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083085001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP68.51.4e-212404078
                         EEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP 40 qrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                         qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  GSBRNA2T00083085001  2 QRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 40
                         9***********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114120.016138IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.4E-10225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-19243IPR004333Transcription factor, SBP-box
PfamPF031102.0E-13237IPR004333Transcription factor, SBP-box
CDDcd002044.47E-7610744No hitNo description
SuperFamilySSF484032.8E-7654747IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.6E-6654758IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.773691758IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MQRFCQQCSR FHLLSEFDEG KRSCRRRLAG HNRRRRKTQP EEIVAPDNTS NNANMDVMAL  60
LTALACAQGR NDAKPNGSPA VPQREQLLQI LNKIKALPLP VDLVSKLNNI GVLARESLDQ  120
PSAMNPQNDM NGVSSPSTMD LLAALSTTLG SSGPEAIAFL SQGGFGNKDS NGKTKLTSSD  180
HATTTNLEKR TLELASFGEG ERTSSSHPSP SQDSDLHAQD TRPNLSLQLF TSSPEDESQP  240
TVASSGKYYS SASSNPVEDR SPSSSPVMQE FFPLQTSPET MRSNNNCRNS CPSPRTSCLP  300
LELFDASTAN PNFKVSGHRH QSGYASSGSD NSPPSLNSDA QDRTGKIVFK LLGKDPSQLP  360
GTLRTEIYSW LSSIPSEMES YIRPGCVVLS VYVAMSASAW EQLEENLLQR VSSLVQDSEF  420
WSNTRFLVNT GRQLASHKHG EIRLSKSWRT LSSPELITVS PLAVVAGEET TLVVRGRSLT  480
NDGISFRCAH MGNYSSMEVT GTAHRSTKFD ELTVNRFKVK GPTLGSLGRC FVEVENGFRS  540
DSFPLIIASA TVCKELNRLE DEFHPNELTE HSSDRPRSRE EVVCFLNELG WLFQKKCASE  600
FSLPRFKFLL VCSVERDYSF LVRTLLDMMV ERNLGKDGLM NTESLDMLAE IQLLNRAVKR  660
RNTKMAETLI HYSVNSTAKK FIFLPNITGP GGITPLHLAA STSGSDGMID VLTNDPQEIG  720
LSSWNTLIDA CGQTPFSYAA MRNNHSYNTL VARKLADKRN GQMSLNIENG IDQIGLSKRL  780
SSELKRSCNT CASVALKYQK KVSGSRRLFP TPVIHSMLAV ATVCVCVCVF MHAFPLVRQG  840
SHFSWGGLDY GSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-142374984squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1655660RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083085001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693690.10.0squamosa promoter-binding-like protein 16
RefseqXP_013693697.10.0squamosa promoter-binding-like protein 16
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLA0A078I9A20.0A0A078I9A2_BRANA; BnaA02g18170D protein
STRINGBra008266.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]