PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083274001
Common NameGSBRNA2T00083274001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 242aa    MW: 27764.1 Da    PI: 10.3712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083274001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141863147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g W + Ed++l+++v+q+G+++W+ I + +  gRt+ +c+ rw + 
  GSBRNA2T00083274001 18 KGLWKPFEDDKLKQLVEQYGPHNWNNIGQLLS-GRTGQSCRQRWCNQ 63
                         5779****************************.***********985 PP
2Myb_DNA-binding58.41.6e-1870114147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g++T+eE+e+l++a++ +G++ W+ Ia+ ++ gRt++ +k++++  
  GSBRNA2T00083274001  70 KGPFTKEEEERLLEAHRIHGSR-WAYIAKLFP-GRTDNALKNHYRVT 114
                          79********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7891364IPR017930Myb domain
SuperFamilySSF466895.99E-2915111IPR009057Homeodomain-like
SMARTSM007175.1E-121766IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-241971IPR009057Homeodomain-like
CDDcd001671.32E-112162No hitNo description
PfamPF139215.3E-182181No hitNo description
PROSITE profilePS5129424.45565119IPR017930Myb domain
SMARTSM007173.4E-1569117IPR001005SANT/Myb domain
CDDcd001671.83E-1172112No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2272118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSRGSNSCDN KKTKGHRKGL WKPFEDDKLK QLVEQYGPHN WNNIGQLLSG RTGQSCRQRW  60
CNQLAPNINK GPFTKEEEER LLEAHRIHGS RWAYIAKLFP GRTDNALKNH YRVTMKRRKR  120
IGLSSTPTSP FNQIRSPIFP LPRLSHNLYP FQRYQMHNSR GPWPYTSASA PRSDQFGSSW  180
ISNAQQETDL YRRKSNELVV HQAATPDHEK NSSGEDGTSM IDHGEKRDVP FFDFLGVGLD  240
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31181187107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083274001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013669270.21e-180transcription factor MYB105-like
TrEMBLA0A078I9V10.0A0A078I9V1_BRANA; BnaA03g52540D protein
TrEMBLA0A3P5ZUX10.0A0A3P5ZUX1_BRACM; Uncharacterized protein
STRINGBra037004.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.15e-95myb domain protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]