PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00083304001

Common Name

GSBRNA2T00083304001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 192aa MW: 21154.5 Da PI: 7.4668

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00083304001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.7	1.5e-06	151	175	5	29
HHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 5 hnerErrRRdriNsafeeLrellPk 29 h+++Er RR+ri +++ L+el+P+ GSBRNA2T00083304001 151 HSIAERLRRERIAERMKALQELVPN 175 99**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-7	144	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.10E-5	144	175	No hit	No description
PROSITE profile	PS50888	10.785	146	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-6	148	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MMDSLLTPST SSHMQTPATT FDHEDFLNHI FASAPWPSVD ETHAPQPPPS DGFVDSRNQQ 60 IMMMPLQSHQ QNDNVDGSSA HALYNGFAAT RSLPFHIPQG SGGGPMHQQG QTQRQPQQQA 120 SASTDTGGTA VSPSHSRTKV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNGNKVF 180 YLIHFQVVFI Y*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00083304001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493711	1e-35	AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
GenBank	AF488601	1e-35	AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022546418.1	1e-128	transcription factor bHLH66-like isoform X2
Swissprot	Q9ZUG9	2e-71	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A078IAB6	1e-139	A0A078IAB6_BRANA; BnaA04g14210D protein
STRING	Bra032111.1-P	1e-127	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-60	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]