PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00083361001

Common Name

GSBRNA2T00083361001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 269aa MW: 28588.7 Da PI: 5.3478

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00083361001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.4e-05	154	194	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq GSBRNA2T00083361001 154 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 194 678889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.877	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	146	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-4	152	198	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-7	152	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGDTAEDQDD QTMVEAVGVP SFSELLMLSD GFLSSSEDHH REVNGGDGGE DSFGFVFSGT 60 NGSKMLCFSG DCQNGDESLF QEPSLPSGVS VSDPSSCTIN TCKNSNDTCT NEKSTKSSNK 120 KRTGSGNGQN MDHNQKPSKK CKKNQDKSSV GIAKVRKERL GERIAALQQL VSPYGKTDAA 180 SVLHEAMGYI KFLQDQIQVL CSPYLINYSL DGGAVTGDVM PGKKVRDLRS RGLCLVPVSS 240 TVHVENSNGA DLWSPATASM GHTMSPSQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.9197	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00083361001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009145780.1	0.0	PREDICTED: transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	1e-148	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A078I5R4	0.0	A0A078I5R4_BRANA; BnaA05g20570D protein
TrEMBL	A0A397ZLA2	0.0	A0A397ZLA2_BRACM; Uncharacterized protein
TrEMBL	M4E0Y1	0.0	M4E0Y1_BRARP; Uncharacterized protein
STRING	Bra022428.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-137	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]