PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00083463001

Common Name

GSBRNA2T00083463001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 301aa MW: 33461.4 Da PI: 6.5093

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00083463001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5.1e-07	11	58	2	47
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 ++W+ ++d + +a + + +W++Ia ++ +tl q+++++ ++ GSBRNA2T00083463001 11 LSWSRDDDIAFERALVVYTDEtdnRWEKIADSVP-EKTLAQVIEHYESL 58 58***************99*********.9********876 PP
2	Myb_DNA-binding	44.1	4.9e-14	97	141	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ +++ + +++G+g+W++I+r++ ++Rt+ q+ s+ qky GSBRNA2T00083463001 97 PWTPLEHSQFLLGLNKYGKGDWRSISRHVVLTRTPTQVASHAQKY 141 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.0E-8	9	61	IPR001005	SANT/Myb domain
CDD	cd00167	5.11E-7	12	59	No hit	No description
PROSITE profile	PS50090	6.33	12	59	IPR017877	Myb-like domain
SuperFamily	SSF46689	4.52E-10	12	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.609	89	146	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-9	90	142	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-15	91	146	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-10	94	144	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.1E-13	94	144	IPR006447	Myb domain, plants
CDD	cd00167	1.25E-9	97	142	No hit	No description
Pfam	PF00249	2.0E-11	97	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MIISEKTGGG LSWSRDDDIA FERALVVYTD ETDNRWEKIA DSVPEKTLAQ VIEHYESLLH 60 DVMMIESGIV PLPDYNDVPI ETNQEDEPKP KRRKAIPWTP LEHSQFLLGL NKYGKGDWRS 120 ISRHVVLTRT PTQVASHAQK YFARLSATNR SRQRHSMHDV NVSESSNISA MKAPITCQDA 180 QATSQPSVDH HAYETPAIWN TQATSPTSLD HHVFGTPTIW NMQAASQPSA NVPLYGTPTT 240 GQSMVGPYVL PYGTHDMNLF APPYMAYRAQ HHSTPYSPVP SASLNTGIVP DNMTNIPTSR 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-13	3	75	1	73	RADIALIS
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00083463001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013675562.1	0.0	transcription factor SRM1-like
TrEMBL	A0A078JRS3	0.0	A0A078JRS3_BRANA; BnaCnng62030D protein
STRING	Bo2g160810.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13391	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23650.1	1e-100	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]